Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02657 ATGTCACTTCTTAACCAGCTCTTTAACAGAGGCGTTTTCGGCACTCGATGCAAAACATGCCTGAACCTAGCAATTTCACGCATTAAGCTGCTACAAAACAAGAGAGATATGCAACTGAAACAAATGTGCAAGGAGATAAGCCAATTCTTGCAGGCCGGCCAAGAGGCAATTTCCAGAATTAGGGTGGAGCATATCATACGAGAACAAAATACATGGGCTGCTTATGAAATATTGGAGTTATTCTGTGAATTTATTCTTGCTCGTGTACCTATAATTGAGAACCAGAAGGAGTGTCCCTCGGAATTGCGAGAAGCTATTGCAAGTATTATTTTTGCTGCTCCTAGATGTTCAGATGTACCAGACTTATTGCACATCAAGAATTTGTTTACCACTAAATATGGGAAAGAATTTGTTTCTGCAGCATCTGAACTTCGTCCTGATTCAGGCGTGAACCGCACGATCATTGAAAAGCTTTCAGTTAGTGCTCCATCTGGAGAGGTAAAACTCAAGGTCTTGAGGGAGATTGTAGAAGAATACAATGTAACATGGGATTCTTCTAAAACTGAGGCTGAATTTAGGAAAACGCACGAAGATCTCCTGATATTCGACATAGCCTAA 618 0.4078 MSLLNQLFNRGVFGTRCKTCLNLAISRIKLLQNKRDMQLKQMCKEISQFLQAGQEAISRIRVEHIIREQNTWAAYEILELFCEFILARVPIIENQKECPSELREAIASIIFAAPRCSDVPDLLHIKNLFTTKYGKEFVSAASELRPDSGVNRTIIEKLSVSAPSGEVKLKVLREIVEEYNVTWDSSKTEAEFRKTHEDLLIFDIA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02657 205 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 16 200 - -
Cca02g02657 205 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Cca02g02657 205 Gene3D - 5 192 IPR042277 -
Cca02g02657 205 PANTHER IST1 FAMILY MEMBER 16 200 IPR005061 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02657 Cca-Chr2 47846885 47851747 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02657 - - gmx:100820205 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02657 02 47846885 47851747 Cca02g02657 02 47846885 47851747 ECH