Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02552 ATGCAAAACCTCAATTCCCTTTGCTTAACCATAATTTCCCTCTTTCTCATCTACACAAACAATAAGATCCTAGTAGTGCAAGGCGTGACCTCAGCCTCAGACATCGCAGCACTGAAAGCCTTCAAGGCTTCAATCAAAGGCTCCTCCATCAGCCCGTGGTCATGCCTGGCCTCGTGGAACTTCAGCAGCGACCCATGCTCCCTCCCTCGGCGCACCCACTTCATCTGCGCCCTCACCTGCACCCCAGACTCCACCAGAATCAACCAAATCACCCTCGACCCAGCAGGCTACTCCGGCACACTCACCCCATCAATCTCCCAACTCACACAACTCATCACACTCGACCTCGCCGACAACAACTTGTTCGGCccaatcccctcttcactctcctccctctccaatctccaatccttaaccctccgatccaactccttctcaggcccaatccctccctccatcaccaccctcaaatctcTCCAATCCCTCGACCTCTCTCGCAATTCCCTATCCGGCTACCTCCCTAACTCCATGAACTCCCTCGCCACCCTCCgcaggctcgatctcagcttcaacaaactcaccggttccatcccCAAACTCCCACCCAACTTGCTGGAACTGGCGATCAAGGCCAATTCTCTATCTGGGCCTCTCCAAAAACAAAGCTTTGAGGGGATGGAGCAATTAGAAGTGGTGGAGCTCAGCCAGAACGCGCTCTCCGGCATGGTGGAGTCGTGGGTGTTCCTACTGCCGTCGCTGCAGCAAGTGGACTTGGCCAACAACACGTTCACGGGGGTGCAGATCTCGAGGGTTGCGCGTGGGGGGAGCACCAGCAGCAACCTCGTGGCGCTCGACCTCGGGTTTAACAGAATCCAAGGCTACGCGCCCGCGAATCTCGCCGCGTTTCCCGCGCTCTCGTTCCTCTCGATTCGCCACAACAATCTACGTGGCGCCATCCCGTTGGAGTACGGCCAGATCAGGTCCATCAAGAGGCTCTTCCTCGACGGGAACTTCCTCGTCGGGAAGCCGCCGCCGGGGTTGGTGGCCGCCGGCACGGCGGTTTCCGGGAGCTTGGGGGATAATTGTCTGCAGGTGTGTCCAGGGTCGTCCCAGCTGTGCTCGCCCGCACAGAAACCCAGCTCTGTTTGCAAACAGGCCTACCGTGGTAGACCAATGCCGTAG 1182 0.5076 MQNLNSLCLTIISLFLIYTNNKILVVQGVTSASDIAALKAFKASIKGSSISPWSCLASWNFSSDPCSLPRRTHFICALTCTPDSTRINQITLDPAGYSGTLTPSISQLTQLITLDLADNNLFGPIPSSLSSLSNLQSLTLRSNSFSGPIPPSITTLKSLQSLDLSRNSLSGYLPNSMNSLATLRRLDLSFNKLTGSIPKLPPNLLELAIKANSLSGPLQKQSFEGMEQLEVVELSQNALSGMVESWVFLLPSLQQVDLANNTFTGVQISRVARGGSTSSNLVALDLGFNRIQGYAPANLAAFPALSFLSIRHNNLRGAIPLEYGQIRSIKRLFLDGNFLVGKPPPGLVAAGTAVSGSLGDNCLQVCPGSSQLCSPAQKPSSVCKQAYRGRPMP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02552 393 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 9 391 - -
Cca02g02552 393 PRINTS Leucine-rich repeat signature 159 172 - -
Cca02g02552 393 PRINTS Leucine-rich repeat signature 180 193 - -
Cca02g02552 393 ProSiteProfiles Leucine-rich repeat profile. 182 204 IPR001611 GO:0005515
Cca02g02552 393 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Cca02g02552 393 Gene3D Ribonuclease Inhibitor 201 367 IPR032675 -
Cca02g02552 393 SMART LRR_typ_2 180 207 IPR003591 -
Cca02g02552 393 SMART LRR_typ_2 250 274 IPR003591 -
Cca02g02552 393 SMART LRR_typ_2 108 132 IPR003591 -
Cca02g02552 393 SMART LRR_typ_2 156 179 IPR003591 -
Cca02g02552 393 Pfam Leucine Rich Repeat 111 132 IPR001611 GO:0005515
Cca02g02552 393 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 391 - -
Cca02g02552 393 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Cca02g02552 393 Pfam Leucine rich repeat 154 193 IPR001611 GO:0005515
Cca02g02552 393 SUPERFAMILY L domain-like 74 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02552 Cca-Chr2 46641960 46644080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02552 37 387 Receptor kinase-like Gene Family AT3G05360 31.452 1.44e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02552 - - gmx:100801713 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02552 02 46641960 46644080 Cca02g02552 02 46641960 46644080 ECH