Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02521 ATGCCGAGGAGTTATCTTTGCTTACTGAAGAATATTGCATTCCTTGCACGTACCAATTCTCTCAGTAGGATCGAAGTTGCGACGTTTGTGGTTCCTACATCCCAAAAGTTCAAATATTCAGTTGCGCTTCTTCACTCTCCCTCTTGGAGTTCCATAGCAGACCCACTCAACCTCGCTACGCTCCTACAAGGTCACATTCCTCATTCTAAACTTCTTCAAATTCACGCACGAGTTTTCCTACTTGGTGCACACCAAGACAACCTCGTAGCCACGCGCCTCATCGGCCACTACCCATCACCAATTGCTCTTCGGGTCTTTCACCATCTCCAAAATCCAAACATTTTCCCTTTCAATGCCATCATCAGAGTCCTCGCCCAAGAGGGTCATTTTTTTCACGCCGTTTCCGTCTTCAACCATTTGAAACGGCGTCCACTTTTCCCCAACGACTTAACCTTCTCTTTTCTGCTTAAGGCATGCTTTCGGTCCAAAGATGTCCGTTATGTCGAACAAATTCATGCCCACATTCACAAGATTGGTTTCCTTTCCAATTCTTTTGTTTGTAATGGGTTGGTTTCTGTCTACGCCAAAGGCTTTAAAAAATTATTATCTGCCCGTAAAGCGTTTGATGAAATTCCTGACAAAAGGGTTGTTAGCTGTTGGACTAACTTGATCACTGGTTTTGCTCAGTCTGGTCAGAGTGAAGAGGTTTTGCAGCTTTTCCATGACATGATTAGGCAGAACTTGCTTCCCCAAAGTGATACCATGGTCAGTGTTTTATCGGCTTGTTCTAGCCTTGAGATGGCAAAAATTGAGAAATGGGTTTGCATTCTTTCAGAATTAATTGATGACGGCGTGAATCCTAGAGAAACTTGCCATGATTCGGTTAATACGGTGCTGGTTTATTTGTTTGGTAAATGGGGGAGGATTGAGCAGAGTAGAGAAGGGTTTGACAGAATTTCTGCATCAGGAAAAAGAAGTGTGGTTCCTTGGAATGCTATGATAAGTGCATACGTTCAGAATGGTTATCCTATGGAGGGTTTAAGGCTTTTCCACATTATGGTAGAAGAACAAACCACTAGACCTAATCATATCACAATCGTTAGTGTGCTTTCAGCCTGTGCTCAAATTGGTGATTTGAGTTTTGGTAGTTGGGTTCACGAGTACCTAATATCTCTAGGACATAAAGACACCATTGGGTCAAACCAAATTCTCGCCACATCTTTAATTGACATGTACTCTAAATGTGGCAATTTGGACAAGGCAAAGGAAGTTTTTGAGCATACAGCCTCCAAAGATGTTGTCTTATTCAACGCAATGATCATGGGTCTTGCAGTGTATGGTGAAGGAGAGGATGCGTTGAGACTCTTCTACAAAATGCCAGATTTTGGGTTACAACCCAATGCTGGAACGTTTCTTGGTGCTTTAAGTGCATGCAGTCACTCTGGGTTGCTGGAGAAAGGACGCCAGATATTCAGAGAACTGACCCTTTCCACTACTCTTACGTTGGAACATTTTGCTTGCTATGTTGATCTCCTTGCAAGAGTAGGATGCGTAGAAGAAGCTATTGAGGTTGTGACTTCCATGCCTTTCAAGCCTAACTATTTTGTCTGGGGTGCTTTGCTTGGAGGCTGCTTGCTCCATTCTAGAGGAGAGCTGGCCCAAGAGGTTTCTAGGAGGCTTGTTGAAGTAGATCCATATAGTTCTGCGGGCTATGTTATGTTGGCAAATGCACTTGCATCTGATAGTCAATGGTGTGAGGTCTCAGAGCTGCGGATGGAAATGAAAGAGAAGGGGATCAAGAAACAACCAGGAAGTAGTTGGATTATTGTGGATGGAGTTGTACATGAATTTCTTGTTGCCTGTTTGTCACATCCTAAAATTGAGGAGATATATCATACATTGGCTGGATTGGTGAAGCATATGAAAGTAGCAGCCCATTATCAGCGTGTACTGTTATTAGATAACCTGTGA 1971 0.4313 MPRSYLCLLKNIAFLARTNSLSRIEVATFVVPTSQKFKYSVALLHSPSWSSIADPLNLATLLQGHIPHSKLLQIHARVFLLGAHQDNLVATRLIGHYPSPIALRVFHHLQNPNIFPFNAIIRVLAQEGHFFHAVSVFNHLKRRPLFPNDLTFSFLLKACFRSKDVRYVEQIHAHIHKIGFLSNSFVCNGLVSVYAKGFKKLLSARKAFDEIPDKRVVSCWTNLITGFAQSGQSEEVLQLFHDMIRQNLLPQSDTMVSVLSACSSLEMAKIEKWVCILSELIDDGVNPRETCHDSVNTVLVYLFGKWGRIEQSREGFDRISASGKRSVVPWNAMISAYVQNGYPMEGLRLFHIMVEEQTTRPNHITIVSVLSACAQIGDLSFGSWVHEYLISLGHKDTIGSNQILATSLIDMYSKCGNLDKAKEVFEHTASKDVVLFNAMIMGLAVYGEGEDALRLFYKMPDFGLQPNAGTFLGALSACSHSGLLEKGRQIFRELTLSTTLTLEHFACYVDLLARVGCVEEAIEVVTSMPFKPNYFVWGALLGGCLLHSRGELAQEVSRRLVEVDPYSSAGYVMLANALASDSQWCEVSELRMEMKEKGIKKQPGSSWIIVDGVVHEFLVACLSHPKIEEIYHTLAGLVKHMKVAAHYQRVLLLDNL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02521 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Cca02g02521 656 TIGRFAM PPR: pentatricopeptide repeat domain 117 148 IPR002885 -
Cca02g02521 656 TIGRFAM PPR: pentatricopeptide repeat domain 330 356 IPR002885 -
Cca02g02521 656 TIGRFAM PPR: pentatricopeptide repeat domain 219 250 IPR002885 -
Cca02g02521 656 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Cca02g02521 656 PANTHER OS01G0913400 PROTEIN-RELATED 62 646 - -
Cca02g02521 656 Pfam PPR repeat family 217 263 IPR002885 -
Cca02g02521 656 Pfam PPR repeat family 112 160 IPR002885 -
Cca02g02521 656 Pfam PPR repeat family 326 374 IPR002885 -
Cca02g02521 656 Pfam PPR repeat family 431 478 IPR002885 -
Cca02g02521 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Cca02g02521 656 Pfam PPR repeat 406 426 IPR002885 -
Cca02g02521 656 Gene3D Tetratricopeptide repeat domain 99 295 IPR011990 GO:0005515
Cca02g02521 656 Gene3D Tetratricopeptide repeat domain 395 635 IPR011990 GO:0005515
Cca02g02521 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Cca02g02521 656 Pfam E motif 547 608 IPR046848 -
Cca02g02521 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cca02g02521 656 PANTHER - 62 646 - -
Cca02g02521 656 Gene3D Tetratricopeptide repeat domain 296 391 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02521 Cca-Chr2 46378117 46381611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02521 102 642 Glycoside Hydrolase AT3G49170 30.530 2.61e-79 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02521 - - gmx:100807506 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02521 02 46378117 46381611 Cca02g02521 02 46378117 46381611 ECH