Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02514 ATGGCCATCGACATCCAAACTTTGGAAAACAGGTATCTTGATTCCTGCAGTAGACATGGTGTTATGCCTAACTCTTCTATTTTGTCAAGCCTTTTCAAGGCTGAGTTCAAAAAGTCCAACCATGAGCTGTGCATCCTGGATATTTTAATTGATGACCTAAAGGATATTGATATTGCTCCACTTCTTGACTTATGCATCAACCTTGATACTTCTGAAATAGAAGTGGTTGATGTATGTAATGAATCATCGTGTGTATTAAATGGAGAATATGCATTATCATTGATGCGAGCTATTAATCAAAAGCTTCGAGTAGTCCATCTACAGGATCTTTCATTTGGAAAGGACTTCTTACGGGATATTTCTCAAAGGGGGTTGACATGCCAAGTTTTGACATTGAGGTGTTCTCGTTTCCGGAAGCTGAACTTAATGGGGGAGTTCATGCATATGCACACCCTAAATCTTGATTTCAGTTCTTCGCTTACCTGTTTCCAGGAGGACTGTTTTAATTGTATGCCCAATCTAATGCGCCTCTCAATGTGTGATACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGATTGAATTAAGGTTTCAATATTGGCAGTATTGCAATGATGCTGGGACATCTTTTATCTCATCCAGCGGGAAGACAGATGGCCCTTCTGATTTTAGCCTGCTTGATAAACTTCCTTTTATTGGTGAATCCTTCACTGATACAGCAGAACTGACAGATCCCAGCTTTGGTGCTGAAGATCCAATAAGAAATTTCTATTCCTTTGATGAAGAAGCTATAAATCATGATGTTCAAAGCATGGTTGAGGATTCATCAGACGATAGTGAAGTTGACTTTACTAGTCGACATAATAGATACTGGTTGTCAGATGTTTTTCCTGGTTGGAATTCAGAAGTGCCTCTTCAAAATGAGAATGAAGATGGAGAAGAGTCATTGCAAGGTGATTTTACAGAGCGTATTGCTGATGTTTCTATGAAGTATATGTCTCGTCATGCATCACCAATATGCTATGAGAAACATTACAGAGAGTTCATGATAGCTTCATTACCAAATCTAAAAAATTTAGATAATATGCCAATCAGAAAGATTGACAAGGAAAGGGCTACTGGAATATTTTCTGAATACTTTGAATATCTTCCATATAAATGGAAGCACAAAGAGAGCGTTGTAAATATCTTACAGATGAGAGAAATAAAATCAGGCCACAATAAGGTGCAATCTTCTAAGCATAGGCCATCATATCCTTCTGCAAATTCCCAATATTTTTATACTAGGTCTCTTTGTGCTGCTAAATTGGGGTCTTCAACTTGGCCTTTCTTGCATCCCCTTTCTCTAACAGGATGTGAATTGGACAAGGGCTTTCATCCAAGGCAGTTTGAGTACCATCCATCTGACTCTAGTTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTCATAAACCATGAGAATGAACATATTGTTAGTTATATCCCATCACTTGGAGCAATGAATAGTGTTTTGGGTCTCTGTTGGCTCAAAAAATATCCCTCAAAGCTTATAGCTGGTTCAGACAATGGTTCCTTGAAATTGTATGACATCCTCCAAATACCAAGAAAAGTTACTGGCGCACATGGGAATTTTGGTTGTGTTACCTTTGATGAATTTGACCAGTTGACATCTGTTCATGTTAACTCTACAGATGAACTGTTTCTTGCAAGTGGTTACTCCAGAAATGTTGCTTTATATGACATCAACAGTGGGAAGCGGTTACAAGTGTTCACAGATATGCATCGTGGGCATATTAATGTAGTCAAGTTTGCTAATCATTCCCCATCAATTTTTGCCACTTCATCGTTTGATCACGATGTCAAAATGTGGGACTTGAGACAAAAACCAATACACCCTTGCTTCACTGTTTCTAGCTCTAGAGGAAATGTGATGGTTTGCTTTTCTCCGGATGATCAATATATTCTTGCATCAGCGGTTGATAATGAGGTTAGACAATACCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATCATAAGTGGGAGTTGTGATGAACACGTCCGTATTTGCTGTGCGCAAACAGGAAAGCGCTTGAGAGATATATCCCTTGAGGGAAGAAGCTTAGGAAGTTCCGTGTTTGTTCAATCTTTGAGGGGTGATCCTTTCCGAGTAAGTTATTTTTTCAGCTTTTCCCAGCCTTCTCTTGGTAAAAGGAAAAAAGAGAAGGCATTTAGTATAGTAGTCATTTTTGGACATTTTATGATTTTAAACTCCTTTTTTTTGTTCTTACATTTTTCTTCGTATTGCCTACTTTGGTAA 2415 0.3847 MAIDIQTLENRYLDSCSRHGVMPNSSILSSLFKAEFKKSNHELCILDILIDDLKDIDIAPLLDLCINLDTSEIEVVDVCNESSCVLNGEYALSLMRAINQKLRVVHLQDLSFGKDFLRDISQRGLTCQVLTLRCSRFRKLNLMGEFMHMHTLNLDFSSSLTCFQEDCFNCMPNLMRLSMCDTRITNLWTTVAALSKLPSLIELRFQYWQYCNDAGTSFISSSGKTDGPSDFSLLDKLPFIGESFTDTAELTDPSFGAEDPIRNFYSFDEEAINHDVQSMVEDSSDDSEVDFTSRHNRYWLSDVFPGWNSEVPLQNENEDGEESLQGDFTERIADVSMKYMSRHASPICYEKHYREFMIASLPNLKNLDNMPIRKIDKERATGIFSEYFEYLPYKWKHKESVVNILQMREIKSGHNKVQSSKHRPSYPSANSQYFYTRSLCAAKLGSSTWPFLHPLSLTGCELDKGFHPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDILQIPRKVTGAHGNFGCVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTVSSSRGNVMVCFSPDDQYILASAVDNEVRQYLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHVRICCAQTGKRLRDISLEGRSLGSSVFVQSLRGDPFRVSYFFSFSQPSLGKRKKEKAFSIVVIFGHFMILNSFFLFLHFSSYCLLW 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02514 804 Gene3D - 467 752 IPR015943 GO:0005515
Cca02g02514 804 SMART LRRcap_2 350 368 IPR003603 -
Cca02g02514 804 Gene3D Ribonuclease Inhibitor 99 383 IPR032675 -
Cca02g02514 804 PANTHER BNAC09G30780D PROTEIN 1 763 IPR046377 GO:0071493|GO:0080008
Cca02g02514 804 SUPERFAMILY RNI-like 91 217 - -
Cca02g02514 804 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 636 IPR001680 GO:0005515
Cca02g02514 804 SUPERFAMILY WD40 repeat-like 467 733 IPR036322 GO:0005515
Cca02g02514 804 SMART WD40_4 497 539 IPR001680 GO:0005515
Cca02g02514 804 SMART WD40_4 555 590 IPR001680 GO:0005515
Cca02g02514 804 SMART WD40_4 593 634 IPR001680 GO:0005515
Cca02g02514 804 SMART WD40_4 639 677 IPR001680 GO:0005515
Cca02g02514 804 Pfam WD domain, G-beta repeat 605 634 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02514 - - ccaj:109794308 1501.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02514 02 46345186 46353355 Cca02g02514 02 46345186 46353355 ECH