Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02503 ATGACAATACCCAAACGAAGCTATTCTCGAATTGACACATTGGAGCTGAAAGCTCTGATTGTTCGGAAAATTGGTCATCAGAGAGCTGACAAGTACTTTGATCAGCTTCGAAGGTTATTGAGTTTAAAGATAAGCAAGTCAGAGTTTGACAGGATCTGCATCACGATAATGGGGAGAGAAAATATTCCTCTTCATAATCGACTCATTCAAGCGATTCTGAAGAATGCTTATCTTGCTAAAGTTCCACCTGTTAGAGGCTCTCCAAGAGGAGGAAGTGCATCCAGTGCAAAGGATTCAAATGGGTTGCAAAGAGGCTCCATTCAAACAATGTTTGGGGATGCGTTTCCTCCTTCCATGCGGAGGATAGGCTCTTTGGCTGCTCGAGACCGAGACCGGAGGTTTAAGTGCCGCCAAAATGGTTTGTGGCCGCTGGGAAAGCCCCAATTTGGTCTCGCGTCTGAAGAAATGATGCATAAGACACTGGAGCAGCAGAGTGCAACAGAACTGAATTCCCTTGGCAGCAGACCTCCAATTTCTGTTGAAGAAGGAGAGGAGGTTGAACAGATGGCTGGAAGCCCCAGCATTCAGAGTAGGAGCCCAGTTACAGCTCCTCTTGGTATACCCATGAATTTCAGTCGATGCCGTAGACTTCATTCTAATGTATCATTATGTAGCAAAGATTTCCCAGAGAGCTGTCACGGCAATGGACATCTCCCTGACACCAGGTCTTTGAGGAGCCGTTTGGAGCAAAAGATGGAGAAGGAGGGTTTAACTGTCTCAGTGGATTGTGTAAATCTATTGAATAATGCATTGGATTCGTACTTGAAGAGGTTGATTGAGTCCTTTATGGATTTAGCTGGGTCAAGATCTGGGAATGAGCACGTAAGACAACAAAACAGACAGTTGGTAACCGGTTCAAATGTATTGCTACCTGGAAGATGTATGCAGACAGCGACAAGATCTACTGTTGCATCTGCTTTAGATTTTCGTCTTGCAATGGAATTAAATCCACAAGTTCTTGGACCAGATTGGCCAATACAACTCGAGAAGATTTGCATTCGAGCCGCCGAAGAGTGA 1077 0.4494 MTIPKRSYSRIDTLELKALIVRKIGHQRADKYFDQLRRLLSLKISKSEFDRICITIMGRENIPLHNRLIQAILKNAYLAKVPPVRGSPRGGSASSAKDSNGLQRGSIQTMFGDAFPPSMRRIGSLAARDRDRRFKCRQNGLWPLGKPQFGLASEEMMHKTLEQQSATELNSLGSRPPISVEEGEEVEQMAGSPSIQSRSPVTAPLGIPMNFSRCRRLHSNVSLCSKDFPESCHGNGHLPDTRSLRSRLEQKMEKEGLTVSVDCVNLLNNALDSYLKRLIESFMDLAGSRSGNEHVRQQNRQLVTGSNVLLPGRCMQTATRSTVASALDFRLAMELNPQVLGPDWPIQLEKICIRAAEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02503 358 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 5 358 - -
Cca02g02503 358 PANTHER TRANSCRIPTIONAL ADAPTER 1 5 358 IPR024738 GO:0070461
Cca02g02503 358 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 7 285 IPR024738 GO:0070461
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02503 Cca-Chr2 46249463 46250539 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02503 - - gmx:100817344 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02503 02 46249463 46250539 Cca02g02503 02 46249463 46250539 ECH