Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02492 ATGATGGTTGCCGCAGAAGGCTGCTACTTGTTGTTCATTACCATTTGCCTTTTACTCATCTCAGGCCTTAGCGTTCATTCTTTGTCTTATGATTATTCTGCTACTACAAAGTGTTTGGCAGAACCTGAGGCAGCACAGTATGGAGGAGGCCTTATAGTAAATCCAGGATTTGATCACAACATAGACGGTTGGACAGTATTTGGAAAAGGAGCAATCAAGGAACAAATTTCCAGTGGAGGCAATAGATTCATTGTTGCCCACAACAGAAAACAATCATTGGACTGTTTCTCTCAGAAGGTCCAACTGAAGAAAGGAATGCTATACACCTTTTCTGCTTGGTTTCAGCTCAGTGAAGGAAGTGACACTGTGTCAGTTATATTCAAAACAAAAGGAAGTGAACTGGTACGAGGTGGTCATGTGATAGCAAAATATGGATGCTGGACTCGGCTAAAGGGCGGGATAGCAGCAAACTTCTCAAGTCCTGTTGAGATTCTTTTTGAGAGCAAGAATTCCAATGTGGAAATATGGGCTGACAGTGTCTCCTTACAACCATTTACTAAAAAGCAGTGGAGATCATTACAAGACTCCAGCATTGAGAGGATACGTAAGAGGAAAGTGAGATTCCAGATAACTCATATAAATGAAACAGCGATGAAAGGTGCTATAATTACCAGCACACCAGTAAAGTTGAACTTCCCATTTGGATGTGGAATGAACCATTATATCCTCACAAACAAAGACTACCAGAATTGGTTTGTGTCAAGGTTCAAATTCACAACTTTCACCAATGAGATGAAGTGGTATAGTACGGAGAAAAAGCAAGGCCAGGAAAACTACACCATCTCAGATGCCATGTTGAATTTTACCAAAGCGAATGGCATTTCTGTGAGAGGCCATAACATTTTCTGGGACGATCCAAAATATCAGCCTGAATGGGTTAAGACCCTATCACCTTTAGAATTAGCAGAAGCAGCAACAAGAAGAATAGAATCAGTGGTTTCAAGATACAAAGGAGAACTGATTGCATGGGATGTGATGAATGAGAATCTCCACTTCCACTTTTATGAGGACAATCTTGGTGAAAATGCCTCTGCAAATGCATATGTAGCAGCCTATGAGCTTGATCCAAAACCAAAGATGTTCCTGAATGAGTTTAACACCATTGAATATAGTGGGGATGAGTCTGCCAGCCCAGTCAAATATATCAAGAAACTTGAGGAGATTCTGTCATTTCCAGGAGTTGCTGGAATGTCAGGTCTTGATCTTCTTGCTTCAACTGGACTTCCAATATGGCTCACAGAAGTGAGTGTGGATCCACAGCCAAATCAGGCAGAGTTCTTAGAAGAGGTACTAAGAGAGGCGTACTCTCATCCTGGTGTTGAAGGGATTATAATGTTTTCTGGTCCAGCACAAGCTGGTTTCAACGCCACTACTTTGGCAGATGAGAATTTCAAAAATACTCCGGCTGGAGACGTTGTGGACAAGCTGATTCAGGAGTGGAGAACTGGGTCTATTGTTGCCACTGCAGATGACAGAGGATTTGTAGATATTTCACTGCACCATGGAGACTATGAAGTAACTGTTACACATCCTCTGACCCACTCCTCTCAAACTCTGAATCTAAGTGTAAACAAAGATTTTGCACTGGAAACCATTCGTGTGAAAATGCGTGCATAA 1677 0.4174 MMVAAEGCYLLFITICLLLISGLSVHSLSYDYSATTKCLAEPEAAQYGGGLIVNPGFDHNIDGWTVFGKGAIKEQISSGGNRFIVAHNRKQSLDCFSQKVQLKKGMLYTFSAWFQLSEGSDTVSVIFKTKGSELVRGGHVIAKYGCWTRLKGGIAANFSSPVEILFESKNSNVEIWADSVSLQPFTKKQWRSLQDSSIERIRKRKVRFQITHINETAMKGAIITSTPVKLNFPFGCGMNHYILTNKDYQNWFVSRFKFTTFTNEMKWYSTEKKQGQENYTISDAMLNFTKANGISVRGHNIFWDDPKYQPEWVKTLSPLELAEAATRRIESVVSRYKGELIAWDVMNENLHFHFYEDNLGENASANAYVAAYELDPKPKMFLNEFNTIEYSGDESASPVKYIKKLEEILSFPGVAGMSGLDLLASTGLPIWLTEVSVDPQPNQAEFLEEVLREAYSHPGVEGIIMFSGPAQAGFNATTLADENFKNTPAGDVVDKLIQEWRTGSIVATADDRGFVDISLHHGDYEVTVTHPLTHSSQTLNLSVNKDFALETIRVKMRA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02492 558 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 34 555 - -
Cca02g02492 558 Pfam Glycosyl hydrolase family 10 229 407 IPR001000 GO:0004553|GO:0005975
Cca02g02492 558 Gene3D Glycosidases 223 504 - -
Cca02g02492 558 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 224 496 IPR001000 GO:0004553|GO:0005975
Cca02g02492 558 PANTHER GLYCOSYL HYDROLASE 34 555 IPR044846 GO:0004553|GO:0005975
Cca02g02492 558 SMART glyco_10 265 496 IPR001000 GO:0004553|GO:0005975
Cca02g02492 558 Pfam Carbohydrate binding domain 50 151 IPR003305 GO:0016798
Cca02g02492 558 Gene3D - 39 185 - -
Cca02g02492 558 SUPERFAMILY Galactose-binding domain-like 48 184 IPR008979 -
Cca02g02492 558 SUPERFAMILY (Trans)glycosidases 229 503 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02492 Cca-Chr2 46097736 46101368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02492 26 546 Glycoside Hydrolase AT4G33840 47.698 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02492 - - gmx:100802367 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02492 02 46097736 46101368 Cca02g02492 02 46097736 46101368 ECH