Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02489 ATGGGGTTGTGGTTGTGGGAAGCCTTCGTCAATTGGTTACGCAGTCTCTTTTTCAAGCAAGAAATGGAGTTATCTTTGGTTGGACTTCAGGATGCTGGGAAAACATCACTTGTAAATGTTATTGCAACTGGTGGATTTAGTGAAGACATGATTCCTACGGTAGGATTTAATATGAAAAGGATAACTAAAGGGAATGTGACAATAAAGTTATGGGACCTCGGAGGTCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGAGCTGTTTCAGTTATTGTTTATGTTGTTGATGCAGCTGATCATGACAATTTACCTGTCTCTAGAAATGAACTTCATGACTTGTTAAGCAAACCTTCTTTAAATGGGACTCCCATACTGATTCTGGGTAACAAGATTGACAAACCTGGTGCTTTGTCTATGCAAGATCTAACAGAGCAGATGGGACTAAAATCCATCACTGATAGAGAAGTTTGCTGCTTCATGATCTCCTGTAAAAACTCCACCAACATTGATACAGTTGTTGATTGGCTTGTAAAACATTCTAAATCATTGAACTGA 561 0.3957 MGLWLWEAFVNWLRSLFFKQEMELSLVGLQDAGKTSLVNVIATGGFSEDMIPTVGFNMKRITKGNVTIKLWDLGGQPRFRSMWERYCRAVSVIVYVVDAADHDNLPVSRNELHDLLSKPSLNGTPILILGNKIDKPGALSMQDLTEQMGLKSITDREVCCFMISCKNSTNIDTVVDWLVKHSKSLN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02489 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 183 IPR027417 -
Cca02g02489 186 SMART ras_sub_4 19 185 - -
Cca02g02489 186 ProSiteProfiles small GTPase Rab1 family profile. 17 186 - -
Cca02g02489 186 Pfam ADP-ribosylation factor family 11 180 IPR006689 GO:0003924|GO:0005525
Cca02g02489 186 ProSiteProfiles small GTPase Arf family profile. 15 182 - -
Cca02g02489 186 SMART sar_sub_1 6 182 IPR006689 GO:0003924|GO:0005525
Cca02g02489 186 TIGRFAM small_GTP: small GTP-binding protein domain 20 178 IPR005225 GO:0005525
Cca02g02489 186 PRINTS GTP-binding SAR1 protein signature 23 46 IPR006689 GO:0003924|GO:0005525
Cca02g02489 186 PRINTS GTP-binding SAR1 protein signature 79 104 IPR006689 GO:0003924|GO:0005525
Cca02g02489 186 PRINTS GTP-binding SAR1 protein signature 124 145 IPR006689 GO:0003924|GO:0005525
Cca02g02489 186 SMART rab_sub_5 22 185 - -
Cca02g02489 186 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 5 186 - -
Cca02g02489 186 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 5 186 - -
Cca02g02489 186 ProSiteProfiles small GTPase SAR1 family profile. 1 186 - -
Cca02g02489 186 Gene3D - 3 183 IPR027417 -
Cca02g02489 186 SMART arf_sub_2 5 186 - -
Cca02g02489 186 CDD Arl10_like 23 181 IPR044154 GO:0003924|GO:0005525|GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02489 Cca-Chr2 46043927 46046474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02489 26 148 Miscellaneous Gene Families AT5G05670 28.358 4.90e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02489 K07955 - jre:108979721 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02489 02 46043927 46046474 Cca02g02489 02 46043927 46046474 ECH