Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02475 ATGTTGCAAACCCTAGGAGGCGTAAGCTTCCGCTTGGTGAATCGGTCATGGCTGAGAAGCATGACGGCGCGTGCATTCTCTTCCTTCTCCGATTATGGAGACCAATCACGCGGTGGCCTTCCCCGCTTCTACTCCGAGACTCTTCCTCCTTCCAAGGGTAGTGTTATACGCGTGCAAGGTGATGAGTTCTGGCATATGACAAAAGTATTGAGGTTGAGCACCAATGATAGGGTACAGCTCTTCAATGGGAAAGGAGGTCTTGTAGAAGGATGCATACAGAACATTGACCGCACTGGGCTTGATTTTGTTGCATTGAGTGATTTGATATCAATGCCTCCACAAAATACACAATTGCACGTATTTGCTGGTTTTGGTACTCTAAAGGGTGGCCGTGCTGACTGGCTTGTAGAGAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCTCTATTGACTGAACGTTCTCCAACAATCTCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCTGCATCTAAACAATGTCAACGACTTCATGAAATGGTCCTGAAACATCCTATAGAGGTTGATGACCTTTCGCACCTTATTGCACAGTCAAAGCTATCTCTTCTCGCAACCGCAAAGGCAATTCCTGTTCTTAGTGCATTGACGTCATTGGAAAAGGAAACTAGTGGCTTAATCATAATTGGACCAGAAGGCGATTTCACTGAGAAAGAAGTGAGTATGATGATGGAAGCAGGTGCTACAACTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCACGATAGCGCTTTTGGCAACTGTCATGTTATGGTCTGACAAGCAGCAAACTTCAGTTGATTCCCCGCTGTAG 867 0.4602 MLQTLGGVSFRLVNRSWLRSMTARAFSSFSDYGDQSRGGLPRFYSETLPPSKGSVIRVQGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVALSDLISMPPQNTQLHVFAGFGTLKGGRADWLVEKCTELGANSVTPLLTERSPTISENRVDRLERVILAASKQCQRLHEMVLKHPIEVDDLSHLIAQSKLSLLATAKAIPVLSALTSLEKETSGLIIIGPEGDFTEKEVSMMMEAGATTVSLGPHRLRVETATIALLATVMLWSDKQQTSVDSPL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02475 288 SUPERFAMILY PUA domain-like 43 103 IPR015947 -
Cca02g02475 288 Gene3D - 39 286 IPR029026 -
Cca02g02475 288 Pfam RNA methyltransferase PUA domain 59 103 IPR046887 -
Cca02g02475 288 Pfam RNA methyltransferase domain 116 273 IPR046886 -
Cca02g02475 288 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 40 282 IPR006700 GO:0006364|GO:0008168
Cca02g02475 288 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 55 274 IPR006700 GO:0006364|GO:0008168
Cca02g02475 288 CDD RsmE-like 118 271 IPR046886 -
Cca02g02475 288 SUPERFAMILY alpha/beta knot 116 277 IPR029028 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02475 K09761 - gmx:100777253 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02475 02 45901681 45904681 Cca02g02475 02 45901681 45904681 ECH