Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02473 ATGAAGCTGAGACTCAGATCTTTGGAATCCAAAGAAACCATTAAAATACAAGTCCCTGATTCCTGTTCTCTGCAGCAACTCAAAGACACCATTTCTCACACCATCTCTTCTTCCTCTTCTCTGCATCTCTCCCTCAACACAAAGGACGAGATTCGCGCCTCTTCGCCCGACCAGCCCCTCCACTCCCTCGGCTTCATCACCGGGGACCTCGTCTTCTACTCTCTTAACCCCACCGCCTTCTCCCCCGAAACCCTAGCCCACAAGCCAGAAACCACTTCCCGCCACGGACCCACCATCCAAGCCTTGCCGGAGAGCCTTGATGACGACGCACCTTCGATTCCCACCACGGAAAAGCCTCCAACTTTGGATGATGCGGAAGCGGATACCGTCGACACGATTGATGGGTCTAACGAGGCGGTGGTGGTGAGTACTAATTCGGAGCCTTTCTTTGTGAGAAGGGTTCTAAAAGAAGCGCTTGGAAACAACGTTAGTGATTTCAAGTTGTTAGTGTTCACTGTCCATGGTATTGTTCTTGAGTCTGGGTTTGTTCGAGTCGATCTTGATTCGGTTATGGATGTTGGTTGTTCTCACATGCTTGAGGATCCTCCTTCAGTGTTTTCTTCTGTGGTATCTTTGAGGTATACCCTGCCTGAGATTCTGACTAATGGTGCTTCACATAGTGTGAATATTAAATTTCAAACATTGGGGCATTTTGTGAACGTGTGTGGATCTTTGTCTGATGATGTTGGGTCGAGGTTGCATTGTGTTTGTTTGGATAAACGTAAATGTGTTAGGCCTTTAGAGTTGATGCTGGCAAATTGTGAATCTAAAGGTAGCGTTAATGACAGTGGAGATTTTCAGTTTGGAAATGAAGTTTTTGAAATGTGGAAGATGGTGAAAGATAGGCTTGCGTTGCCGTTGTTAATTGATCTTTGTGAGAAGGCTGGTTTGGATCTTCCACCTTGTTTCATGCGGCTACCAATGGAGCTTAAGCTCATGATTTTAGAGCGTCTTCCCGGAGTTGATTTGGCCAAAGTGGCTTGCACCTGCTCGGAATTGCGATACTTGTCCACCAACAATGAATTGTGGAAGAAGAAATATGAGGAGGAGTTTGGAGAAGTGGGAGAGAGCAGAGGGCGCATTTTCAAGGATTTGTTTGCTTTATCCTGGAAAACAAATAAGAGGTGGCAAGGGATTTCTTATCGTGGTTTTTCAAGACCCTGTATTCCCCCACCCAACCCTTTTCGAATTCCTCCATTTTGGGGTGGAGGATATGGTATGCAGCCAGTAGCATTCCCTAAACCCCCACCAAGGCGGTTTGTCATTCCCCCGTGTGTTCTTAGAGAATTCAATCAATAA 1359 0.4643 MKLRLRSLESKETIKIQVPDSCSLQQLKDTISHTISSSSSLHLSLNTKDEIRASSPDQPLHSLGFITGDLVFYSLNPTAFSPETLAHKPETTSRHGPTIQALPESLDDDAPSIPTTEKPPTLDDAEADTVDTIDGSNEAVVVSTNSEPFFVRRVLKEALGNNVSDFKLLVFTVHGIVLESGFVRVDLDSVMDVGCSHMLEDPPSVFSSVVSLRYTLPEILTNGASHSVNIKFQTLGHFVNVCGSLSDDVGSRLHCVCLDKRKCVRPLELMLANCESKGSVNDSGDFQFGNEVFEMWKMVKDRLALPLLIDLCEKAGLDLPPCFMRLPMELKLMILERLPGVDLAKVACTCSELRYLSTNNELWKKKYEEEFGEVGESRGRIFKDLFALSWKTNKRWQGISYRGFSRPCIPPPNPFRIPPFWGGGYGMQPVAFPKPPPRRFVIPPCVLREFNQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02473 452 Gene3D - 323 398 - -
Cca02g02473 452 MobiDBLite consensus disorder prediction 83 124 - -
Cca02g02473 452 PANTHER F-BOX PROTEIN SKIP22 1 448 - -
Cca02g02473 452 SMART fbox_2 326 366 IPR001810 GO:0005515
Cca02g02473 452 Pfam F-box-like 325 367 IPR001810 GO:0005515
Cca02g02473 452 MobiDBLite consensus disorder prediction 83 99 - -
Cca02g02473 452 Gene3D - 147 322 - -
Cca02g02473 452 ProSiteProfiles F-box domain profile. 320 366 IPR001810 GO:0005515
Cca02g02473 452 SUPERFAMILY F-box domain 320 382 IPR036047 GO:0005515
Cca02g02473 452 PANTHER F-BOX PROTEIN SKIP22 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02473 Cca-Chr2 45869517 45871384 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02473 K10293 - gmx:100796338 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02473 02 45869517 45871384 Cca02g02473 02 45869517 45871384 ECH