Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02460 ATGAAAAACTTCCACACAGTTCTTATCTTCTTCATTTGGTTTGTTTCGTCAAGTCTGTTTCAAGTTTCAGTTGCATCTATTGTTTCAACAGGAGACTTCAATAAGGACTTCTTTGTGATATGGTCTCCTACCCATGTGAACACATCTGCTGATGGACACACAAGAGGCTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCTTCAAATCAAATGTTTTTATTTGGGAAAATTGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACTGTCCTGGCCTATTATCTTGCCTCCGATCAACCTAATAGAGATGAGATAGACTTTGAGTTTCTTGGCAACGTCTCTGGGCAGCCATATATTCTACAAACAAATATTTTTGTAGATGGAACTGACAATCGAGAGGAGAGAATTTATCTGTGGTTTGATCCAACAAAGGACTTCCATACTTATTCTGTGTTGTGGAATCTGCACCAGATTGTATTAACGGTGGATATGATTCCCATAAGAGTGTATAGAAACCATGGAGACAAGGGTGTAGCATTTCCTAGATGGCAGCCAATGAGTCTGAAAGCGACCCTGTGGAATGGTGATAGCTGGGCAACACGAGGTGGCCAAGATAAGATTGATTGGACAAAGGGTCCCTTCATAGCTTCATTCAAAAATTACAACATTGATGCTTGTGTGTGGAATGGGAACCCAAGGTTTTGCAGAGCAGCTAGCCCTACCAATTGGTGGAACCAATACAAATTTAGCACACTGACTTCCACACAAAGAAGGTGGTTCAAATGGGTCAGGAAATACCACATGATTTATGATTACTGTCTAGACAATGAGAGGTTCCAAAACAATCTTCCAAGGGAATGTTCTCTTCCCAAGTATTGA 888 0.411 MKNFHTVLIFFIWFVSSSLFQVSVASIVSTGDFNKDFFVIWSPTHVNTSADGHTRGLKLDQESGAGFASNQMFLFGKIDMQIKLVPGDSAGTVLAYYLASDQPNRDEIDFEFLGNVSGQPYILQTNIFVDGTDNREERIYLWFDPTKDFHTYSVLWNLHQIVLTVDMIPIRVYRNHGDKGVAFPRWQPMSLKATLWNGDSWATRGGQDKIDWTKGPFIASFKNYNIDACVWNGNPRFCRAASPTNWWNQYKFSTLTSTQRRWFKWVRKYHMIYDYCLDNERFQNNLPRECSLPKY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02460 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca02g02460 295 Gene3D - 19 294 - -
Cca02g02460 295 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca02g02460 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Cca02g02460 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 5 293 - -
Cca02g02460 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 221 IPR000757 GO:0004553|GO:0005975
Cca02g02460 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Cca02g02460 295 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Cca02g02460 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 293 IPR044791 GO:0004553
Cca02g02460 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02460 Cca-Chr2 45751130 45752577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02460 57 295 Glycoside Hydrolase AT2G14620 70.293 5.20e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02460 K08235 - gmx:100783152 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02460 02 45751130 45752577 Cca02g02460 02 45751130 45752577 ECH