Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02329 ATGGAGACGAGAGCAGTTAAAGTTCGATGCCAGAGGATTGGCTGCGACGCTATGTTCTACGTGGACGACAATCCCGACGGTTCCTGTCGATACCATGATTCGGGACCTATATTTCATGATGGAACAAAAGAATGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCAGCTTGTTTTTGGAAATTCCAGGATGTAAGACAGGAAAACATACAACAGAAAAGCAAGTATTTACACAGGTTAAGAAGAACACCACACCCCCACCAACTGCAGTTTCTTCAAGCAATGCATCATCGAAGGACTCTTGTTCCAGGTGTCGGCAGGGTTTCTTTTGCTCAGATCATGGTTCACAAAACAAAGCCGTAAATATCATTGGAGAAAAGCCTGCAAATTTTGCTGGAGATGCCTCTGCTGATAACAATTCAAGTGTCCAGGCTCCGAAACCTAAGAAGATAGTTGATATAAATGAGCCCCAAGTATGTAAAAATAAAGGATGTGGTCAAACTTTCAAGGAAAAGGATAATCATGAAACTGCTTGCAGCTACCATCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGTGGAAGTGCTGTGATATTCATGTGAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCACAAAGGGATGGCATAATGCTGATCCAGAGTCCTGA 675 0.4296 METRAVKVRCQRIGCDAMFYVDDNPDGSCRYHDSGPIFHDGTKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKQVFTQVKKNTTPPPTAVSSSNASSKDSCSRCRQGFFCSDHGSQNKAVNIIGEKPANFAGDASADNNSSVQAPKPKKIVDINEPQVCKNKGCGQTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCTKGWHNADPES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02329 224 MobiDBLite consensus disorder prediction 79 100 - -
Cca02g02329 224 ProSiteProfiles CHORD domain profile. 10 69 IPR007051 -
Cca02g02329 224 ProSiteProfiles CHORD domain profile. 159 218 IPR007051 -
Cca02g02329 224 Gene3D - 151 221 - -
Cca02g02329 224 Gene3D - 1 73 - -
Cca02g02329 224 PANTHER CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN RAR1 4 223 IPR043316 -
Cca02g02329 224 Pfam CHORD 158 218 IPR007051 -
Cca02g02329 224 Pfam CHORD 9 69 IPR007051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02329 Cca-Chr2 44048162 44053166 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02329 K13458 - gmx:100194419 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02329 02 44048162 44053166 Cca02g02329 02 44048162 44053166 ECH