Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02313 ATGGCAATAGAGTGCATACACACCATGGTGCCTCAACCAGCAAACCAAGAAAGTAGCAAAGAGCTGGTGTTTGATGCCTCTGTCCTCAGACACCAACTCCACATACCCTCACAATTCATTTGGCCTGATGAGGAGAAGCCATGTTTGGATGAGCCTGAGCTACCTGTCCCATTCATTGACCTGGGGGGCTTCCTCTCAGGTGACCCTCTTGCTGCAATGGAAGCCTCAACCCTTGTTGGCCAGGCATGCCAAAACCATGGCTTCTTTCTTGTTGTCAATCATGGGATTGACCCAAAGTTGATCTCTGATGCTCACCTTTACATGGACCACTTCTTTGCCCTTCCCCTGTCTCACAAACAGAGGGCTCAGAGGATGCCAGGGGAACACTGTGGCTATGCTAGTAGCTTCACTGGCAGATTCTCCTCTAAGCTCCCTTGGAAAGAGACACTCTCCTTTCAGTACTCAGCTCACAAAGACTCACCACCCCTTGTCAAAGACTACTTGTGCAGCAAAATGGGCAACGACTTTCACCAATTTGGAAAGGTTTACCAAGACTACTGTGAAGCCATGAGCAATCTTTCTCTGGGTATAATGGAGCTTCTAGGAATGAGTCTTGGAGTTGGTAACGACTTTTTTAGGGAGTTCTTTGAGGAGAATAGTTCAATAATGAGGCTGAATTACTACCCTCCTTGTCAAAAGCCTGACCTCACTTTAGGCACTGGACCTCATTGTGATCCAACATCTTTGACCATTCTTCACCAGGACCAGGTGGGTGGCCTGCAAGTTTGTGTTGACAATGAGTGGCATTCCATTAGACCAGATTTCAATGCCTTTGTTGTCAATATCGGTGATACGTTCATGGCTCTTTCAAATGGGAGATACAAGAGCTGCTTGCATAGGGCAGTGGTGAACAGCGAGACAACAAGAAAATCTTTGGCCTTCTTTTTGTGCCCGAGAAGTGACAAGGTGGTGAGTCCACCATGTCAATTAGTGGACAAATTGAGCCCAAGGCTGTACCCAGATTTTACATGGCCCATGCTGCTTGAGTTCACTCAAAAGCATTACAGGGCTGACATGAAAACCCTTGAGGCATTTGCCAACTGGCTTCAACGGAAAAGTAACTAA 1125 0.4702 MAIECIHTMVPQPANQESSKELVFDASVLRHQLHIPSQFIWPDEEKPCLDEPELPVPFIDLGGFLSGDPLAAMEASTLVGQACQNHGFFLVVNHGIDPKLISDAHLYMDHFFALPLSHKQRAQRMPGEHCGYASSFTGRFSSKLPWKETLSFQYSAHKDSPPLVKDYLCSKMGNDFHQFGKVYQDYCEAMSNLSLGIMELLGMSLGVGNDFFREFFEENSSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVCVDNEWHSIRPDFNAFVVNIGDTFMALSNGRYKSCLHRAVVNSETTRKSLAFFLCPRSDKVVSPPCQLVDKLSPRLYPDFTWPMLLEFTQKHYRADMKTLEAFANWLQRKSN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02313 374 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 370 - -
Cca02g02313 374 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Cca02g02313 374 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 161 IPR026992 -
Cca02g02313 374 PRINTS Isopenicillin N synthase signature 79 96 - -
Cca02g02313 374 PRINTS Isopenicillin N synthase signature 243 264 - -
Cca02g02313 374 PRINTS Isopenicillin N synthase signature 278 304 - -
Cca02g02313 374 PANTHER GIBBERELLIN 20-OXIDASE 16 370 - -
Cca02g02313 374 Gene3D - 25 357 IPR027443 -
Cca02g02313 374 SUPERFAMILY Clavaminate synthase-like 29 358 - -
Cca02g02313 374 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02313 Cca-Chr2 43870413 43872186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02313 33 368 Glycosyltransferase AT5G59530 27.954 3.69e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02313 K05282 - gmx:100816992 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02313 02 43870413 43872186 Cca02g02313 02 43870413 43872186 ECH
Cca08g00557 08 9220046 9222144 Cca02g02313 02 43870413 43872186 PCT