Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02311 ATGGCTTTCTCTTCTACGCTTGACAAATTCATCCTCTCTTCCTTTAAACCCCAAAACTCCATTTTCCCACTTGCAATCCAACCTTCCTCCTTCCTCCCATGCCCTTCTTCGTTCAAGACTCGGAAGCTTCCCTTCAGAATCCGCTACGGTTCAATCATCAGAGCCACGTCATCATCCTCATCGCCTTCCACAACCATTGCTGAACCCGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATTGAAGGACAGAAGACTGGTACTAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTAAGCAAGAAAACTACCTTGCAAATTGGATACAGGCCCTGTTTAATTCATTGCCTCCGGAGGATTACAAGAATGGTCTGTTGGTGTTGGGAGGCGATGGTCGATACTTTAATCGGGAAGCTGCACAGATAATTATCAAAATTGCTGCTGGGAATAGTGTTGGAAAAATTCTGGTTGGAAAGGAAGGTATATTGTCGACACCAGCTGTTTCTGCAGTAATAAGGAAGAGAAAGGCAAATGGTGGGTTTATTATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGTATTAAGTTTAATTACGGAAGTGGACAACCTGCACCAGAGTCCATTACTGACAAGATTTACGGAAACACCCTATCGATATCTGAGGTAAAGATAGCTGACATTCCTGATGTTGACTTATCAAATGTTGGGGTTACAAATTTTGGAAGCTTCAGTGTGGAAGTCATAGACCCGGTGTCTGACTATCTGGAACTATTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGTCTTCTTTCACGACCGGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTCGTTGATAAACTTGGTGCTAGTCTGGATTCAATTTCAAATGGAATTCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATATGCAAAGGATCTTGTCAACATTTTATATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCCATTCCATACTTCAAGAATGGTGTTAAGGGTCTTGCTCGATCAATGCCGACAAGTGGTGCTCTGGATCGTGTTGCTGAAAAATTGAACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCAGTTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGACGGCATCTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAAACCAGGGGAGAAATTGACCTCTGTATCTGATGTTGTGAAGGAGCACTGGGCAACATATGGAAGAAATTTCTTTTCAAGATATGACTATGAGGAATGTGAATCTGAAAGTGCCAATAAGATGATAGAATACCTACGAGATAGTGTGTCTAAGAGCAAGCCTGGTGATAAATATGGAAGTTATACCCTCCAGTTTGCAGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACGGATGGCTCAAGGATCATATATCGTTTATCAGGAACTGGTTCTGCAGGGGCAACTGTTAGAGTCTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGCTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCATTATCCGTGTCAAAGCTCAAAGATTTCACAGGGAGGGACAAGCCTACAGTCATCACATAA 1887 0.4192 MAFSSTLDKFILSSFKPQNSIFPLAIQPSSFLPCPSSFKTRKLPFRIRYGSIIRATSSSSSPSTTIAEPEGIKIKSIPTKPIEGQKTGTSGLRKKVKVFKQENYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNREAAQIIIKIAAGNSVGKILVGKEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYGSGQPAPESITDKIYGNTLSISEVKIADIPDVDLSNVGVTNFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPIFVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAREAIPYFKNGVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLTSVSDVVKEHWATYGRNFFSRYDYEECESESANKMIEYLRDSVSKSKPGDKYGSYTLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDADAQIALKPLIDLALSVSKLKDFTGRDKPTVIT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02311 628 Gene3D - 73 261 - -
Cca02g02311 628 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 56 628 IPR045244 GO:0004614|GO:0005975
Cca02g02311 628 CDD PGM1 75 628 - -
Cca02g02311 628 Gene3D - 365 463 - -
Cca02g02311 628 Gene3D - 474 628 - -
Cca02g02311 628 SUPERFAMILY Phosphoglucomutase, C-terminal domain 493 628 IPR036900 GO:0016868|GO:0071704
Cca02g02311 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 179 193 IPR005841 GO:0005975|GO:0016868
Cca02g02311 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 279 298 IPR005841 GO:0005975|GO:0016868
Cca02g02311 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 315 328 IPR005841 GO:0005975|GO:0016868
Cca02g02311 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 344 359 IPR005841 GO:0005975|GO:0016868
Cca02g02311 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 73 286 IPR016055 GO:0005975|GO:0016868
Cca02g02311 628 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 180 189 IPR016066 GO:0000287
Cca02g02311 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 256 365 IPR016055 GO:0005975|GO:0016868
Cca02g02311 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 85 225 IPR005844 GO:0005975|GO:0016868
Cca02g02311 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 257 360 IPR005845 GO:0005975
Cca02g02311 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 368 491 IPR005846 GO:0005975|GO:0016868
Cca02g02311 628 Gene3D - 262 364 - -
Cca02g02311 628 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 56 628 - -
Cca02g02311 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 352 498 IPR016055 GO:0005975|GO:0016868
Cca02g02311 628 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 552 603 IPR005843 GO:0016868|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02311 Cca-Chr2 43825936 43837761 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02311 K01835 - gmx:100802730 1189.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02311 02 43825936 43837761 Cca02g02311 02 43825936 43837761 ECH