Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02301 ATGACTAGCATGATTAAGGCCGGGCAATCTCTGAAATGGGTTCTCTTGAATTTGATTAACAAGTGCAACGACTTGAGATCTTTCAAGCAAATCCATGCGCATCTATTGACTTCTGCCCTTGTTGCCAATGACTTGGTTGTCACAAAAGCTGCAAGCTTTTTCGGAAAACGTGTGACTGATGTTCATTACCCTTGCAATTTCCTGAAGCAATTTGATTGGAGCTTGAGCTCGTTCCCTTGCAATTTGATGATTTCTGGGTATGCTTCTGGCCAATTACCCTGGGTTGCAATCCTGATTTTTAGATGGGCTGTTAGGAATGGGTTTGTGCCTGATGTGTACACTGTCCCTGCAGTTTTGAAATCTTGTGCCAAGTTTTCTGGGATTGGAGAGGTTAGACAGTTTCATTCAGTAGCTGTTAAGACTGGCTTGTGGTGTGATATCTATGTGCAAAACACTCTTGTCCATGTTTATAGCATTTGTGGGCACACTGTTGGTGCTGGCAAGGTGTTTGATGACATGCTTGTGAGAGATGTGGTATCTTGGACTGGTTTGATATCTGGGTATGTGAAGGCTGGGTTGTTTAATGATGCCATTGCATTGTTTTTGAGAATGGATGTGGAGCCTAATGTGGCAACCTTTGTTAGCATACTTGGGGCTTGTGGGAAATTGGGTTGTTTAAATTTGGGGAAGGGGATTCATGGGTTGGTTTTCAAGTGTCTGTGTGGGGAGGAGTTGGTGGTATCCAATGCTGTGTTGGATATGTATATGAAGTGTGAATCTGTGGCTGATGCAAGGCAAATGTTTGATGAGATACCTGAAAAAGATATTATTTCTTGGACTAGCATGATAGGCGGGTTAGTGCAATGGCAGTGTCCCAGGGAATCACTGGATTTGTTCAGTCAAATGCAGGATTCAGGTTTTGAGCCTGATGGGGTTATACTGACTAGTGTGCTTTCTGCTTGTGCCAGTCTCGGGCTTCTTGATTATGGCAGATGGGTTCATGAATACATCGATCGCTGCCATATCAAGTGGGATGTTCATATTGGAACAGCATTGGTTGACATGTATGCAAAATGTGGTTGTATAGAGATGGCACAGCGTATCTTCAATGGAATGCATTCTAAGAATATTCGTACTTGGAATGCTTATATAGGTGGTCTAGCAATAAATGGATATGGGAAGGAAGCATTAAAACAATTTGAAGATTTGATTGATTCTGGCACAAGGCCTAATGAGGTGACATTTCTAGCAGTTTTTACAGCTTGCTGCCATTCTGGTTTGGTAGATGAAGGCCGGAAGTATTTCAATAAGATGACAAGTCCCCACTTCAATCTTTCTCCCTGGTTAGAACACTATGGATGCATGGTTGATTTGCTCTGCAGGGCTGGACTGGTGGGGGAAGCTGTGGAGTTAATAAAGACAATGCCCATGCCCCCTGATGTACAGATCCTAGGAGCTCTTTTGAGTGCCTGCAATACATATGGAAATGTTGGATTCACCCATGAAATGTTGAAATCACTGAAGAATTTTGAATTCCAAGATAGTGGCATATATGTGCTTCTTTCTAATCTGTATGCAACTGATAAAAAATGGGCTGAAGTGAGAAGCGTTAGGAGACTGATGAAGCAGAAAGGAATAAGCAAGGCTCCAGGTTCTAGCCTTATAAGGGTGGATGGTAAGAGTCATGAATTTTTTGTTGGAGATAATAGCCATCCTCAAAGTGAGGATATTTACGTACTATTGAACATCCTTGCCAATCAAATCTACCTTGAGGGGCATATTATTACCATATCTTGA 1797 0.4218 MTSMIKAGQSLKWVLLNLINKCNDLRSFKQIHAHLLTSALVANDLVVTKAASFFGKRVTDVHYPCNFLKQFDWSLSSFPCNLMISGYASGQLPWVAILIFRWAVRNGFVPDVYTVPAVLKSCAKFSGIGEVRQFHSVAVKTGLWCDIYVQNTLVHVYSICGHTVGAGKVFDDMLVRDVVSWTGLISGYVKAGLFNDAIALFLRMDVEPNVATFVSILGACGKLGCLNLGKGIHGLVFKCLCGEELVVSNAVLDMYMKCESVADARQMFDEIPEKDIISWTSMIGGLVQWQCPRESLDLFSQMQDSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDRCHIKWDVHIGTALVDMYAKCGCIEMAQRIFNGMHSKNIRTWNAYIGGLAINGYGKEALKQFEDLIDSGTRPNEVTFLAVFTACCHSGLVDEGRKYFNKMTSPHFNLSPWLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSACNTYGNVGFTHEMLKSLKNFEFQDSGIYVLLSNLYATDKKWAEVRSVRRLMKQKGISKAPGSSLIRVDGKSHEFFVGDNSHPQSEDIYVLLNILANQIYLEGHIITIS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02301 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 207 IPR002885 -
Cca02g02301 598 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Cca02g02301 598 TIGRFAM PPR: pentatricopeptide repeat domain 179 205 IPR002885 -
Cca02g02301 598 Pfam E+ motif 562 581 IPR046849 -
Cca02g02301 598 Pfam E motif 494 555 IPR046848 -
Cca02g02301 598 Gene3D Tetratricopeptide repeat domain 444 563 IPR011990 GO:0005515
Cca02g02301 598 Gene3D Tetratricopeptide repeat domain 329 443 IPR011990 GO:0005515
Cca02g02301 598 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 195 259 - -
Cca02g02301 598 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 194 - -
Cca02g02301 598 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 260 592 - -
Cca02g02301 598 Pfam PPR repeat family 375 424 IPR002885 -
Cca02g02301 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cca02g02301 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Cca02g02301 598 Gene3D Tetratricopeptide repeat domain 237 328 IPR011990 GO:0005515
Cca02g02301 598 Gene3D Tetratricopeptide repeat domain 78 236 IPR011990 GO:0005515
Cca02g02301 598 PANTHER OS04G0488200 PROTEIN 9 194 - -
Cca02g02301 598 PANTHER OS04G0488200 PROTEIN 260 592 - -
Cca02g02301 598 PANTHER OS04G0488200 PROTEIN 195 259 - -
Cca02g02301 598 Pfam PPR repeat 277 307 IPR002885 -
Cca02g02301 598 Pfam PPR repeat 179 204 IPR002885 -
Cca02g02301 598 Pfam PPR repeat 451 475 IPR002885 -
Cca02g02301 598 Pfam PPR repeat 151 177 IPR002885 -
Cca02g02301 598 Pfam PPR repeat 248 276 IPR002885 -
Cca02g02301 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02301 Cca-Chr2 43671815 43673666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02301 82 594 Glycoside Hydrolase AT3G49170 35.509 1.02e-105 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02301 - - ccaj:109794299 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02301 02 43671815 43673666 Cca02g02301 02 43671815 43673666 ECH