Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02298 ATGGGTTTGATATTGAAGCAATTTATATGGCCAATTCTGGTTGGTTGCATCACTTGCATGTTCCTTCATGGTTTATCTTATTCAGATAACGGTGAAAAGTACACATTTGTAAGAGAAGCGACTTCTGCTCCAGCAACCTTATATTATGACTACATAGTGATTGGTGGGGGAACAAGTGGGTGTCCACTGGCAGCAACACTCTCACAAGGTGCAAGAGTTTTGGTCCTTGAAAGGGGAGGGTCTCCTTACACGAACCCTGAGAAAATTGACATAAGCAACTTTGTGAACGCCCTCGCTGACATAAGCCCCACATCGTTTTCCCAACAATTCATATCGAGAGATGGGGTGCTCAACGCCAGGGCTCGAGTCCTGGGTGGTGGGTCTGTCCTGAATGCAGGGTTCTATTCGAGGGCGAGCTCCATTTACATAAGGGAATCTGGTTGGAATGAAAGTTTGGCTGAGGAATCATATGAGTGGGTTGAAAAGAAGGTGGCGTTTGAGCCTCAAATGCTGCAGTGGCAATCGGCAGTGAGGGATGGGTTGCTTGAAGCTGGCGTGTCGCCTTACAATGGTTTTACTTATGATCACTTATATGGGACTAAGATTGGAGGGACAATTTTTGATAAGGAGGGTAACAGACACACTGCTGCTGATTTGTTGGAGTATGCTGATCCCAGGAGGATTTCTGTTTATCTGCATGCCACAGTGCACAAGATACTGTTCAAGTACAACACAGAAAAAAGAAGGCCACAGGCTTATGGAGTAATTTTCAAGGATGCATTGGGAGTGATGCATGGAGCGTACTTAAGCGCAAATGGAAAGAATGAGATAATCTTATCAGCGGGTGCAATTGGAAGTCCACAGTTGCTGATGGTGAGTGGGATTGGGCCTGGCAACCATCTTGAAGCCCATGGGATCAAAGTGGTTTTGGATCAGCCCTTGGTGGGTCAAGGGATGGCAGATAATCCAATGAACATTCTACTGGTTCCTTCCCCTCTGCCAGTTGAAGTCTCTCTTGTCCAAACAGTGGGCATCACCAAGTCTGGCAACTTCATTGAAGCAGGAAGTGGATTAAGCGTGGGCCATTCTTGGTCTGAACGCCTACAAGGGATTTTTGAATTTGTGTCCAACCAGTCTGTGCAGCCTTCCACGGTTTCCCCGAAAGCCAAGGAGAGTGTTGCAGACGCCATAAGATATTTAGCGAATCCAACTCTGAAAGGAGGAATCATAGTTGAAAAGATCCTAGGACCACGATCTTCGGGTCATTTGGAGCTCATAACCACTAATCCGAACGACAACCCATCGGTGACCTTCAACTACTTTCAGGATCCAGAAGACTTAAGAAGGTGTGTTGAGGGCATGAAAACCGTCATAGATGTGATCAACTCAAAAGCATTCTCCAAGTTCCGCTACCGCAACATGCCGGTTCAAGTTCTCATAGACTTGATGTTGCACTTACCACTCAACTTGCGCCCAAAACATTTGGACGCTGCCTTTTCTTTACAACAGTATTGCATAGACACTGTGCTAACCATTTGGCATTACCACGGTGGGTGTCAATTGGGTAAGGTTGTTGATCATAATTATAAGGTTATTGGTGTCGAAGCTCTCAGGGTTATTGATGGATCCACTTTTCTTGCCTCACCCGGGACTAATCCTCAGGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAAATACTAAATAAAAGATTCTTCCGTGGGAGGGAGTGA 1737 0.4577 MGLILKQFIWPILVGCITCMFLHGLSYSDNGEKYTFVREATSAPATLYYDYIVIGGGTSGCPLAATLSQGARVLVLERGGSPYTNPEKIDISNFVNALADISPTSFSQQFISRDGVLNARARVLGGGSVLNAGFYSRASSIYIRESGWNESLAEESYEWVEKKVAFEPQMLQWQSAVRDGLLEAGVSPYNGFTYDHLYGTKIGGTIFDKEGNRHTAADLLEYADPRRISVYLHATVHKILFKYNTEKRRPQAYGVIFKDALGVMHGAYLSANGKNEIILSAGAIGSPQLLMVSGIGPGNHLEAHGIKVVLDQPLVGQGMADNPMNILLVPSPLPVEVSLVQTVGITKSGNFIEAGSGLSVGHSWSERLQGIFEFVSNQSVQPSTVSPKAKESVADAIRYLANPTLKGGIIVEKILGPRSSGHLELITTNPNDNPSVTFNYFQDPEDLRRCVEGMKTVIDVINSKAFSKFRYRNMPVQVLIDLMLHLPLNLRPKHLDAAFSLQQYCIDTVLTIWHYHGGCQLGKVVDHNYKVIGVEALRVIDGSTFLASPGTNPQATVMMLGRYMGEKILNKRFFRGRE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02298 578 SUPERFAMILY FAD/NAD(P)-binding domain 44 572 IPR036188 -
Cca02g02298 578 PANTHER OSJNBA0019K04.7 PROTEIN 5 572 - -
Cca02g02298 578 PIRSF Alcohol_oxidase 34 576 IPR012132 GO:0050660
Cca02g02298 578 Gene3D - 49 561 IPR036188 -
Cca02g02298 578 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 518 - -
Cca02g02298 578 Pfam GMC oxidoreductase 49 323 IPR000172 GO:0016614|GO:0050660
Cca02g02298 578 Gene3D - 166 511 - -
Cca02g02298 578 ProSitePatterns GMC oxidoreductases signature 2. 282 296 IPR000172 GO:0016614|GO:0050660
Cca02g02298 578 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 5 572 - -
Cca02g02298 578 Pfam GMC oxidoreductase 417 562 IPR007867 GO:0016614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02298 Cca-Chr2 43633436 43635964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02298 1 572 Miscellaneous Gene Families AT5G51950 61.485 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02298 - - gmx:100780453 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02298 02 43633436 43635964 Cca02g02298 02 43633436 43635964 ECH