Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02297 ATGGGTTCCTCTGTTGCAACAAAAAGCATAGCAGATTCAGCGTCGTGGTGGTGCGCCATGGTGTTGTTGGGCATGATACTGCTGGGGTCGATAAGGGAAAGCACGGTGGCAGAAGAAGGTGAGGAGGCTGTGAAAGGGAACAACCTGCGTGAACGAGCGTGTGATGAAATTTACGTTGTTGGAGAAGGGGAGACCCTCCACACCATCAGTGACAAGTGCAACGACCCGTTTATCGTGGAGCGGAACCCCCATATCCATGATCCCGATGATGTTTTCCCTGGCCTTGTCATCAAAATCACACCCACCAATACTAGCAAGAGTGGTTTCCTTTGGATCTAA 339 0.5074 MGSSVATKSIADSASWWCAMVLLGMILLGSIRESTVAEEGEEAVKGNNLRERACDEIYVVGEGETLHTISDKCNDPFIVERNPHIHDPDDVFPGLVIKITPTNTSKSGFLWI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02297 112 Pfam LysM domain 58 100 IPR018392 -
Cca02g02297 112 Gene3D LysM domain 49 108 IPR036779 -
Cca02g02297 112 PANTHER LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 6 106 - -
Cca02g02297 112 CDD LysM 57 99 IPR018392 -
Cca02g02297 112 PANTHER EMBRYO SAC 1 6 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02297 Cca-Chr2 43605985 43612459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02297 - - gmx:100500258 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02297 02 43605985 43612459 Cca02g02297 02 43605985 43612459 ECH