Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02288 ATGGCCGACGACGACTATGATGACATGGACATGGGGTACGAGGATGAGCCCCCAGAGCCTGAGATTGAGGAAGGTGCAGAGGAGGATGCGGAAAACAACAAAAACGATGAGTTAACTGGAGAGCCACTCGAAGCTGAGGATAAGGAAGAAGGACAACCGGTGGAGCGGCCTCGGAAGACATCAAAGTATATGACTAAGTATGAACGTGCCAGGATTTTGGGTACCCGTGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTCGAGTTTGAGGGGGAAACTGATCCACTTGAGATTGCCATGAAGGAGCTTCGAGAGCGGAAGATACCCTTTACAATCCGGCGCTACTTGCCTGATGGAAGCTATGAAGACTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGCGGTGATTGA 432 0.5046 MADDDYDDMDMGYEDEPPEPEIEEGAEEDAENNKNDELTGEPLEAEDKEEGQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVEFEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02288 143 Pfam RNA polymerase Rpb6 60 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 MobiDBLite consensus disorder prediction 1 62 - -
Cca02g02288 143 SMART RNA_pol_Rpb6_2 58 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 PIRSF RpoK/RPB6 1 134 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 143 - -
Cca02g02288 143 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 65 79 IPR020708 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 Gene3D - 2 134 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 143 - -
Cca02g02288 143 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 62 117 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 SUPERFAMILY RPB6/omega subunit-like 1 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cca02g02288 143 MobiDBLite consensus disorder prediction 1 31 - -
Cca02g02288 143 MobiDBLite consensus disorder prediction 32 62 - -
Cca02g02288 143 PIRSF RPB6 1 134 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02288 Cca-Chr2 43430654 43433437 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02288 K03014 - gmx:100794926 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02288 02 43430654 43433437 Cca02g02288 02 43430654 43433437 ECH