Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02273 ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTCGCTCCGAAACCCAAAACTCCTCCATCAGCCACTTCCCAAACACCTCCTCCTACTCCCACTCCCAAAATCTCAGCCACCGTCGCTTTCTCCCCTTCCAAACGCCGCCTCACTTCCCATCTCACACCCCCTCGCAAACACCAGAAGCTTCTCGAACCTTCCACGTCCTCTCAGCCACAACCTTCTTCTTCTTCTTCCAAGCCCCCAAACTACACTCCCTTGGAACAACAGGTCCTAAACCTCAAGGCCAAACACCCCGATGTCCTCCTCATGGTCGAAGTCGGTTACAAGTACCGTTTCTTCGGCCAAGACGCGGAACACGCCGCCAGAGTTCTCGGCATTTACGCCCACGTGGACCACAACTTCTTAACCGCGAGCATACCAACTTTTCGACTCAATGTCCACGTCAGAAGGCTCGTCAGCGCGGGCTACAAGGTCGGCGTCGTCAAGCAGACCGAGACCGCCGCCATCAAGGCCCAAAGTTCCAACCGTTTGGGCCCATTCTGCCGTGGGCTTTCGGCCCTCTACACCAAGGCCACGCTAGAGGCGGCGCCGGATTTGGGGGGACCCGAGGACGGGTGCGGGGGAGAAAGCAACTACTTGATGTGTGTGGTGGAGAAGAGTGTTTTGGGTGAGAAGGGAAATTGTGGGGTTAATGTCAGGCTTGGGTTTGTTGCTGTGGAGATTTCCACCGGGGATGTTGTTTATGCGGAGTTTGGTGATGATTTTCTGAGGGGTGCGCTTGAGGCTGCTCTTCTGAGCTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCGAAGCAAACAGACAAGTTATTGTTGAATTTTGCTGGACCTGCCTCAAATGTTCGAGTAGAGCGTGTTTCACGAGATTGCTTCACTGGGGGGGGTGCTCTTGCTGAAGTTATGACCCTGTACGAGAACATGCATGTAGAAGGTTCATCAGATTCAATACAAAGCAATGATTTGGCTGAGAACAGAAGTCAGCAGTTAGTAATCAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGAATTTGGTTTTGAAAGAATTCTGTGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCAAAACGGAAATGACTCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTGAAAAATAATAGTGATGGATCTGAGACCGGTTCCTTGCTGCAAATTATGAATCGAACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCTCATCCTCTGTGTGATCAAACCTTAATTTCTGCTCGTCTTCATGCTGTAACTGAAATTGCAGAGTCCATGGGATCTTGTAATAGTGTGAAGAATCTTGGACATGTTGAGGAAGATCCTGATGTAGCAATTGTGCAACCTGAGTTAGCATACATACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTCGTTGCAGTAATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAACATAGGAGATGGGAATAATAATACATTGCACTCTAATCTGTTAAAAAAGTTAATTTTGACTGCTTCCTCTGGCATTGTTATTGACAATGCTGCAAAATTGTTGTCATCTTTAAATAAAGACGTTGCTGATCAAGGAGATCTAACAAAATTAATCATTGCATCAGAGGGACAATTCCCAGAGATCATTAGAGCTCGGAAGGCTTTCAAGCTGGCGGTGGAACACTTAGATTCATTGATTGACTTGTATCGCAAACGGTTTGGAATGCAAAATTTGGAATTCATGAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACTAATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGATATCACCCTCCTGAAGTAGTGTCAGCATTGGACAAGTTATCATTAGCAAAAGAAGAACTCACTGTTGCCTGCCAAGCAGCTTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGATTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTAGATTGTCTACATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGGCCAGTGTTTGTAGATGATCATGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGATAATTTTGTTCCAAATGATACAAACATGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGAATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTACATAGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCAACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTCGTCACTCACTATCCAAAGATTGCCAACCTGGCTGCTGAATTTCCTGGCTCTGTGGCAGCATATCACGTATCACATCTGACCTCACGTGATGCAAGTAAAAATTCCAACTTGGATCATGATGTCACTTACCTCTACAAGCTCGTGCCTGGTGTTTCAGAGAGGAGTTTTGGCTTTAAGGTTGCTCAACTAGCACAGTTACCATCACATTGCATCAGTCGAGCCATGGTCATGGCTTCCAAATTAGAAGCACTAGTAAACAATAGAATACATAGTAGATCAAGAAAGGAACTACTATTGGATATGCTGGTGATTGGTCAAGAGCAAGAACAGCTTATGGCTCAACCATATGATCGTCCACATCAAGAGTTTGGTATGGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCTCTACAAGATGATGACTGTGCAAAAAACTTTCACCTTTTGGAGCATGCTAGAAGCATTGCAAGGAAATTAATTGGCAGATAA 3168 0.4467 MGKQKQQVISRFFAPKPKTPPSATSQTPPPTPTPKISATVAFSPSKRRLTSHLTPPRKHQKLLEPSTSSQPQPSSSSSKPPNYTPLEQQVLNLKAKHPDVLLMVEVGYKYRFFGQDAEHAARVLGIYAHVDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAQSSNRLGPFCRGLSALYTKATLEAAPDLGGPEDGCGGESNYLMCVVEKSVLGEKGNCGVNVRLGFVAVEISTGDVVYAEFGDDFLRGALEAALLSLSPAELLLGDPLSKQTDKLLLNFAGPASNVRVERVSRDCFTGGGALAEVMTLYENMHVEGSSDSIQSNDLAENRSQQLVIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASLRPFSSKTEMTLSANALQQLEVLKNNSDGSETGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVTEIAESMGSCNSVKNLGHVEEDPDVAIVQPELAYILSLVLTTLGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGDGNNNTLHSNLLKKLILTASSGIVIDNAAKLLSSLNKDVADQGDLTKLIIASEGQFPEIIRARKAFKLAVEHLDSLIDLYRKRFGMQNLEFMSISGTTHLIELSTNVKVPSNWVKVNSTKKTIRYHPPEVVSALDKLSLAKEELTVACQAAWNSFLRDFSKHYADFQASVQALAALDCLHSLAILSRNKGYVRPVFVDDHEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIANLAAEFPGSVAAYHVSHLTSRDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAMVMASKLEALVNNRIHSRSRKELLLDMLVIGQEQEQLMAQPYDRPHQEFGMAYKDFYLNLKAALQDDDCAKNFHLLEHARSIARKLIGR 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02273 1055 Gene3D DNA repair protein MutS, domain I 73 198 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 Pfam MutS domain III 396 722 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 Gene3D - 572 698 - -
Cca02g02273 1055 MobiDBLite consensus disorder prediction 21 35 - -
Cca02g02273 1055 MobiDBLite consensus disorder prediction 1 84 - -
Cca02g02273 1055 Gene3D - 730 1005 IPR027417 -
Cca02g02273 1055 SUPERFAMILY DNA repair protein MutS, domain III 395 727 IPR036187 -
Cca02g02273 1055 Gene3D MutS, connector domain 207 390 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 MobiDBLite consensus disorder prediction 36 50 - -
Cca02g02273 1055 Pfam MutS domain I 84 194 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 Pfam MutS family domain IV 596 681 IPR007861 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 68 1051 - -
Cca02g02273 1055 MobiDBLite consensus disorder prediction 61 84 - -
Cca02g02273 1055 SUPERFAMILY DNA repair protein MutS, domain I 78 192 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 SUPERFAMILY DNA repair protein MutS, domain II 208 285 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 PIRSF Msh6 72 1005 IPR017261 GO:0006298|GO:0030983
Cca02g02273 1055 SMART mutATP5 774 971 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 SMART DNAend 411 757 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 ProSitePatterns DNA mismatch repair proteins mutS family signature. 855 871 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 Gene3D - 393 722 - -
Cca02g02273 1055 Pfam MutS domain II 211 290 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cca02g02273 1055 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 68 1051 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cca02g02273 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 974 IPR027417 -
Cca02g02273 1055 Pfam MutS domain V 777 974 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02273 Cca-Chr2 43243078 43252778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02273 K08736 - gmx:100789883 1758.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02273 02 43243078 43252778 Cca02g02273 02 43243078 43252778 ECH