Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02272 ATGGTGTCGTCGAAGGTGGTGAATACGTATCCCTTGTCCAGCTACACCTTCGGCACCAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGATCGTCTCGCTCGTATGAAAGTCAACTACATGAAGGAAGGGATGAGGACCAGTGTCGAAGGAATTTTACTGGTACAAGAACACAATCATCCTCATATACTTCTTCTGCAAATAGGAAACACATTCTGCAAACTACCAGGTGGTCGTCTCAAACCAGGAGAGAATGAAACTGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCACCAGCTCTTGTGCCTGACTGGGAGATTGGCGAGTGTGTTGCAATTTGGTGGAGGCCAAATTTTGAAACTATAATGTATCCATACTGCCCTCCTCATATAACTAAACCCAAGGAGTGCAAAAAGCTTTTCCTTGTTCATCTGTCTGAGAGAGAATACTTTGCAGTGCCCAAAAATTTAAAACTGCTTGCTGTTCCGTTGTTTGAACTCTATGACAATGTCCAGAGATACGGGCCAGTTATATCCACCATTCCCCAGCAACTGTCCAGATTCCAGTTTAAAATGATCACCAATTAA 603 0.4478 MVSSKVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENETEGLKRKLTSKLGANSPALVPDWEIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02272 200 Pfam Nucleotide hydrolase 6 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca02g02272 200 PIRSF CPSF-25 1 200 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca02g02272 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE 1 182 - -
Cca02g02272 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 1 182 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca02g02272 200 ProSiteProfiles Nudix hydrolase domain profile. 46 171 IPR000086 -
Cca02g02272 200 SUPERFAMILY Nudix 53 151 IPR015797 -
Cca02g02272 200 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02272 Cca-Chr2 43236172 43239715 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02272 K14397 - gmx:100306068 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02272 02 43236172 43239715 Cca02g02272 02 43236172 43239715 ECH