Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02270 ATGGTTAAGGTAACTATAGTTGGAAGGGTAAGCGATGGATTGCCTCTAGCACAAGGACTGAGATATATGAATGAAGAGAATGGATATCTTGCATGTTACAAACAACAAGCAGAGTTCATACTCCAAGAAATTTCAAGGGGGGCATTGATGGCTTCCAAGATGACTATTCATGCTGATCATTTCTGCTTCAATTACTTGGTGGAGAACGGGGTTGTTTTCATTGTCTTGTGTGAGTCCACGTACCCAAGAAAACTGGCTTTCCATTACCTACAAGATATACAAAAGGAGTTTGAGAAATTTGATAAAACCCTCATAGGCAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTGTAATTGCAAACTTTAGTAGACAATACACTGATACAAGAACCCAGGCCAACCTGTCAAAACTTAAAGCTAACCGGAAACAAGATTTAGATATTGCTACTGAAGATATTTACAACATTTTAGAAAGAAAGAGAAACTCAGAAATAGTGAGAAGGTTACAAGCTACTCCTCAACCTGAATCCACAATATGGTGTTCCCCACGCCTTGAGGTGATTGCTTTGAAATGGACACCTATTATGATCATTGTAATTACTTCGATGGCTCTTGTGTGGGCTAGCCTAGCCCTCACTGACGACTTTATTATTTCAAGGTGGTGA 672 0.3929 MVKVTIVGRVSDGLPLAQGLRYMNEENGYLACYKQQAEFILQEISRGALMASKMTIHADHFCFNYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDGVIANFSRQYTDTRTQANLSKLKANRKQDLDIATEDIYNILERKRNSEIVRRLQATPQPESTIWCSPRLEVIALKWTPIMIIVITSMALVWASLALTDDFIISRW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02270 223 SMART Longin_2 36 120 IPR010908 -
Cca02g02270 223 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 221 - -
Cca02g02270 223 CDD Longin 5 128 IPR010908 -
Cca02g02270 223 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Cca02g02270 223 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 221 IPR044565 GO:0005484|GO:0006888|GO:0006890
Cca02g02270 223 Gene3D Longin domain 1 129 - -
Cca02g02270 223 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Cca02g02270 223 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02270 Cca-Chr2 43223485 43225047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02270 16 168 Miscellaneous Gene Families AT3G54300 25.287 1.14e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02270 K08517 - gmx:100781527 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02270 02 43223485 43225047 Cca02g02270 02 43223485 43225047 ECH