Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02263 ATGGTCCACAAATTTTCCCATTCGTTGATTATTTTGCGTAGATTATGCAGCCATCCGTTTGATGGGGATGATGGATTTGAATTTATTGAGGAGCCTTTGAAAAAACTGGGTTCAGATTATGATGAAAGGCTCCATTTGAAGGATGATTTTGGTGGTAACCAAAAGCAGTTTTCACTTAGGAAAGGGTTCATAGAAACTGTTAAGTTAGATGCTAAGAGGGTTCTTGAGGTACTCCGGCAAGATGGTCCTGGTCTTGATGCCAGGTTGGTTTTAGGTGAGTTGCATGTAAGGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTGTGAGAATAAGACCAGGTGTGCGAAGCTGGCATATAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCACACTGCGAATGCGTATCACTTAGTTATGAACATATATGCTGAGTGCGATGAGTTTAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAAAAAGGGCTTCCTGCTACTGCTCGAACTTTCAACATCTTGATCCGGACTTGTGGTGAGGCGGGGTTGGCTAAGAAATTGGTGGAGAGGGTCATAAAATCAAAGACGTTTAACTTTAGGCCTTTTAAGCACTCATACAATGCAATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGATGCTTGATGGATTTTCTTCGGATATTTTAACTTACAATATTGTCATGTATGCCAAGTATAGACTTGGAAAGTTGGATCAGTTCCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTCAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCACTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAAATTGGTATAGACCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGGTGCATGCCAGATGTTGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGAGAAAGCGCTGGAAATGTATCAAGATATGGTTTCTAGAGAACAAATTCCAAATGTTTATACATACAATTCCATAATTCGGGGATTATGTAAGGTGGGAAAATTTGACGAGGCATGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATGATTCATTAGCGAGTTGTTTGCGAAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATACGACAGATGACGGAGAGGGGGAAGTATGCCCACATGCATTCAAGATTCAAAGGGCATAAGGCATAA 1404 0.4095 MVHKFSHSLIILRRLCSHPFDGDDGFEFIEEPLKKLGSDYDERLHLKDDFGGNQKQFSLRKGFIETVKLDAKRVLEVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINCENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECDEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERVIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMMLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREIGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKALEMYQDMVSREQIPNVYTYNSIIRGLCKVGKFDEACSMLKEMETKGCSPNSVVYDSLASCLRNAGKTADAHEVIRQMTERGKYAHMHSRFKGHKA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02263 467 Pfam PPR repeat 313 344 IPR002885 -
Cca02g02263 467 PANTHER OS10G0506000 PROTEIN 2 466 - -
Cca02g02263 467 TIGRFAM PPR: pentatricopeptide repeat domain 389 423 IPR002885 -
Cca02g02263 467 TIGRFAM PPR: pentatricopeptide repeat domain 250 282 IPR002885 -
Cca02g02263 467 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Cca02g02263 467 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Cca02g02263 467 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cca02g02263 467 SUPERFAMILY TPR-like 352 452 IPR011990 GO:0005515
Cca02g02263 467 Pfam PPR repeat family 351 400 IPR002885 -
Cca02g02263 467 Pfam PPR repeat family 247 293 IPR002885 -
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cca02g02263 467 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 2 466 - -
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Cca02g02263 467 Gene3D Tetratricopeptide repeat domain 383 454 IPR011990 GO:0005515
Cca02g02263 467 Gene3D Tetratricopeptide repeat domain 311 382 IPR011990 GO:0005515
Cca02g02263 467 Gene3D Tetratricopeptide repeat domain 229 310 IPR011990 GO:0005515
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Cca02g02263 467 Gene3D Tetratricopeptide repeat domain 102 224 IPR011990 GO:0005515
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cca02g02263 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Cca02g02263 467 Pfam PPR repeat 215 244 IPR002885 -
Cca02g02263 467 Pfam PPR repeat 424 453 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02263 215 453 Glycosyltransferase AT1G05670 30.544 6.33e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02263 - - ccaj:109794849 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02263 02 43177490 43178893 Cca02g02263 02 43177490 43178893 ECH