Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02251 ATGGCTACACAGTACGGCATCAAATTCGCCGTTCACCTCATCACCAATCACTTCGGCActctcgtcgctAAAGTATGCGAAAACCTATTTAAGCATGGACCCCTCGCTTTGGACCAGTTGATTCACTACACGGAGCTTACCAAGGAACAAGTCAAAAACTCCTTACTTGTCTTAGTTCAGCACAATTGTGCCCAAGCATTTGTTCCTGCACCTGAAGATGATGTAGGCAGATTGAGAGTTAGAACTGAGTACATGGCATTGTTTGATAACATAATCCACCGATTGAGATTTCCCAAATTCTTGGAGATTGTGTCGCGGAAGCTTGATGAAGAGTGTGTGGAGCTTCTCGACGGATTGCTTCGTGATGGTAGGCTTACCCTGAAACAAATGGTTGATAGAGCAAGTCAAGGAAAAGAAAATGCTGTGGCTACAAATACTGTACGAGAGATACTCTGTAAACTTTTGGCGGCACGATTTGTTGAACGCTGCCCTGCTCCTGAGCCTGTTGTTTCTACCTCATTTAAAGAAAGTACTACTAAGAAGCGGGGTGCTAAGTCTGCCAAGATATTTGAAGCACCAGAAACATTAGAACAACGTGTTATAGAAGCAGCAGTGCCTGGGGATGGAATCAGATTTTCACTGACTCCAGATACAGGAAGTAATGTTGACGGAGAAACAAATTCAGATGATGCCCAAATGAGTGTTGAAGAAAATGTTGAAGAGGATCAAATTCTTTGGCGTGCAAATTTTGAGGAGTTTATACGTCATCTGAGGCATAAGGTATTGATTGAGAATGTAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAATGCAGTATTGGAGGCAACAAGAACTGGAGAGAGAAAAGTGAAAATGGATAATTCAGTTCCCTTGTCTCTGGATGCAATTATTACAGAGGTGATGAAGACTGATACTGGTCGAACTATGACCATAGATCGTATAAGAGCTTCTCTTGGCCAGTTGGGTTGTTCACAGAGGATGATTGTAGATGATTCATATAGTATTGATTTGAAGAAAATTATTGAAAGGGCTCGAAATGAAGAGGTTGATTCAATTGTTTTGAAAAGATATGGAAGGGATGCCTACAGAATGTTCAGGCTACTGTCAAAGGATGGTGAATTTCGTGACACAGATCAGGAAATAAGAAGAATAAAGGAATTCAATGGACTCAAATTCTATATTAATGTTATGACCTTGTAG 1227 0.4042 MATQYGIKFAVHLITNHFGTLVAKVCENLFKHGPLALDQLIHYTELTKEQVKNSLLVLVQHNCAQAFVPAPEDDVGRLRVRTEYMALFDNIIHRLRFPKFLEIVSRKLDEECVELLDGLLRDGRLTLKQMVDRASQGKENAVATNTVREILCKLLAARFVERCPAPEPVVSTSFKESTTKKRGAKSAKIFEAPETLEQRVIEAAVPGDGIRFSLTPDTGSNVDGETNSDDAQMSVEENVEEDQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLNAVLEATRTGERKVKMDNSVPLSLDAIITEVMKTDTGRTMTIDRIRASLGQLGCSQRMIVDDSYSIDLKKIIERARNEEVDSIVLKRYGRDAYRMFRLLSKDGEFRDTDQEIRRIKEFNGLKFYINVMTL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02251 408 MobiDBLite consensus disorder prediction 214 233 - -
Cca02g02251 408 Gene3D - 2 77 IPR036388 -
Cca02g02251 408 Gene3D - 249 344 IPR036388 -
Cca02g02251 408 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 388 IPR039748 GO:0003697|GO:0005666
Cca02g02251 408 Gene3D - 88 172 IPR036388 -
Cca02g02251 408 MobiDBLite consensus disorder prediction 212 233 - -
Cca02g02251 408 Gene3D - 346 393 IPR036388 -
Cca02g02251 408 Pfam RNA polymerase III subunit RPC82 150 323 IPR008806 GO:0003677|GO:0006351
Cca02g02251 408 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 67 IPR013197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02251 Cca-Chr2 43073107 43080641 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02251 K03023 - gmx:100784750 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02251 02 43073107 43080641 Cca02g02251 02 43073107 43080641 ECH