Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02244 ATGGAATCCCTTTGGAAACTTTTGTATTTGCTGGAGCCTGCACCTGTGACACTTATCACTACAGCTGTGGCTGTGACATTTGGATCTGCATTTCGAGCTCTAAATTACGGGAAAGAAATGGAGCGTAATCGTGACTTGTCGGAAGCATCCATTACATTGGATAGGTCACAAGCATTGATGATCCCAGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACCTGTTCTCTTCTGTCTCGCAGCTTCTCACTGCATTCACTGCCGTTGCGTCTGCATCCTCTCTTTTCTTCTGCTTGTTTCCTTATGTTGCCCATTTGAAGGCACAGTTTGGGTTAGCTGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGAATCCAAGCATTGCTACTGCTAGCCTGCTCTTTCATAGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATTGCATTTGTAAGCCACGTGCGTCTTCCAAACATCAAGATTTGTGCAATGCTCCTTTTTTGTCTGTTCTTGTACGACATTTTTTGGGTTTTCTTCTCTGAGAGATTTTTTGGCGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACTGTTGCTAATAGTTTAAGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGTTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCCGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTGGGAGACATGGCTATCCCAGGCATGCTCCTGGCTTTAGTCCTCTGGTTTGATTATCGCAAGAGTAGGGATACAGTAAATCTCTTGGAGTTACATTCCTCAAAGGGGCACAAATACATATGGTATGCACTACCTGGGTATGCCATAGGCTTGGTAGCTGCTTTGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTATATCTGGTGCCTTCTACTCTGGGACCTGTAATCGTGATCTCTTGGATGAAAAGGGAGCTATTTGAGTTGTGGGAAGGAAACACGCCAAATCTCAATGATAAGGATCGCGAAATAGAAGTTTAG 1116 0.4364 MESLWKLLYLLEPAPVTLITTAVAVTFGSAFRALNYGKEMERNRDLSEASITLDRSQALMIPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLFPYVAHLKAQFGLADPFVSRCCSKSFTRIQALLLLACSFIVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLFCLFLYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVVPGENATDFMMLGLGDMAIPGMLLALVLWFDYRKSRDTVNLLELHSSKGHKYIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIVISWMKRELFELWEGNTPNLNDKDREIEV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02244 371 SMART psh_8 49 348 IPR006639 GO:0004190|GO:0016021
Cca02g02244 371 Pfam Signal peptide peptidase 49 358 IPR007369 GO:0004190|GO:0016021
Cca02g02244 371 PANTHER SIGNAL PEPTIDE PEPTIDASE 4 358 IPR007369 GO:0004190|GO:0016021
Cca02g02244 371 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 3 4 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02244 Cca-Chr2 42969977 42972593 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02244 K09598 - gmx:100794976 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02244 02 42969977 42972593 Cca02g02244 02 42969977 42972593 ECH