LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02227	ATGGATTCGAGCGACAGTGGTCGCGGTTTCTCCAAACGCGAGAGGGACGACGAGGATTGGGAGTTTAGCGACAAGAGGAAAGATAGGTCTAGAAAGTTCGGCAGCAATGGGGACGAGGGCGAGGGTTCCGACGGAAGCGCCAGGAGGAAGCGTTCCAGCAGAACCGATAGCGACGATTACGATTCGCGCTCCAAGCAGGGGGCGAAGAAGAGGCAGGAGGAGAGCACGCTGGAGAAGTTGAGCAGTTGGTACGAGGATGGGGAATTGGATGGTTCCGATAAGATTGCGAGGAAGCGTGACGGCGACGCCGATTTGCACGGCGCGAGTGTCGCCGGCAAGGATGATGGTAAGGGCGAAGGCGGTGGTGGCCGGGACAAGGGTGAGCCGGCCAGGAGTTCGAGGAGGAAGTGGGATGAGGTTGATGCTGTTAGTGTGAGGAGGGCGCAGGATAAGCGCGACAGTTCTAGGGATAGGGAGAAGAGTGGATCTGCTAGGAGTGAGCATGGGGAGAGTAAGGCCTCTGGTGGTGATAGAGTTGTGAAGTCTAATAGTAAGGATGATAGAAGAGGTGATTCTGAGAGAGGGAAGAGTAAGGGTAAGTCGGAGTCGGTGGGGGATGTTGGTCGTGAGGATCGGGTTGAGAAGCCCAGGCACCACAGGAATGCTGCTGGTTATGATGTGGCTGAAACCTGGGATAGGTCCTCGAATGTGGAGGAGGATGGACATGTGCGGGTTAGGGATAAGAGTGCTAGGGAAACTGGGAACTCGAACAGGTCGAGGACGCCGGAGAGGAGTGGAAAACGCCATCAAGATTTGGAGAACTCTGAGATGGATTATGAAAGAAGTGGTAGCTTTAAGAGGAAGGAGAATGAAAGTGATGGATATAAGGATGATAGATCCAAAGGAAAAGATGATACTTGGAATGACAGGAGGAAGGATAGGGAAAGTTCTAAAGAAAGCTGGAAAAGGAGGCAGCCGGGTAATGCCGACAAAGATTCAAAAAATGAGGAGAGTGCTTTTGATGACAGCAGAGATTGGGAGTTGCCTAGGCATGGTTATGAGAGGATGGACAATGAAAGGCCTCATGGACGGTTTGGTGGTAGAAAAGACGTCAGCAGGGGGGAAGCTGTTAAAACATCCACAAAGTATGGGATTTCGAATGACAATTATGATGTGATAGAAATCCAGACCAAGTTTTATGACTATGGGAAATCGGAATCTATGTCCAACCATCCCAAGAGAACTGAAGCTCATCAGCAGTACAATACTAAGTCAGGTGCTAATGATGAAGAATGGGCATATCATCAGGAGGAAAGAACAAGGAAGAGTGATTTATCTGGGTCTGGGACACCTGGTGATGATCTGAAGGAGAGATATGCTGATGATGACTATGATTTTTATGGTGGAAGAGGAAGAGGTCAGAAAGGTGCTGCATCTGCTCGCAGTACTGGTGGCCAAAGTTCTAGTAGTGGAGGCTCACAACCTCAATATGGAAACCTGGACTCCGGTTCCTTTAATAGAGCTGGTCCACAAGGAATTAAAGGGAACAGGGTTGGTAGAGGAGGAAGGATGAGGCCCACTGGGAGAGACAATCAGCAGGTTGCAATGCCAATGCCAATGATGGGATCACCCTATGGACCTCTTGGGATGCCGCCGCCTGGGCCAATGCAGCCTCTTTCACATGGCATGTCACCTGCTCCCGGTCCACCAATTTCCCCTGGGGTCTTCATGTCACCATTTAATCCAGCTGTCTGGCCTGGAGCTCGAGGAGTTGATATGAATATGATAGGTGTTCCGCCTGCAGTGTCTCCTGTACCCCCAGGTCCTTCAGGTCCAAGATTTAATGCTGCTAATATAGGGAACCCACCAAATCCTGCAATGTATTATAACCAATCAGGCTCTGGAAGGGGAATTCCCCCCAACATTTCTACTCCTGGTTTTAATCCCACAGGATCAATGACTCGAGGAGCCCCACCTGATAAAACTCAAGGGGGATGGGTTCCTCCTAAAAGTGGAGCTCTTGGTAAAGCTCCTTCCAGAGGTGAACAGAATGATTATTCTCAAAATTTTGTTGACACTGGTATGCGGCCACAGAATTTCATTAGGGAGCTTGAGCTCACAAATGTTGTAGAGGATTACCCTAAGCTTCGAGAGCTTATACAGAAAAAGGATGAGATTGTGGCAAATTCTGCATCTGCTCCCATGTATTATAAGTGTGACCTGAAAGAGTTTGAACTATCTCCAGAGTTCTTTGGAACGAAATTTGATGTGATTCTTGTAGATCCCCCATGGGAGGAATATGTGCACCGTGCCCCTGGCGTTGCTGACCACATGGAGTACTGGACATTTGAAGAAATAATGAATCTCAAGATTGAGGCTATAGCAGATACGCCTTCTTTCATCTTCCTTTGGGTGGGTGACGGTGTAGGTCTTGAACAAGGTCGTCAATGCCTGAAAAAGTGGGGATTTCGCAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGCCTGCGGCATGATTCACACACTTTATTTCAACATTCAAAGGAACACTGCTTGATGGGCATAAAAGGAACTGTTCGTCGAAGTACTGATGGCCATATAATTCATGCCAATATTGACACTGATGTCATTATTGCTGAAGAACCTCCTTATGGTTCAACACAAAAGCCTGAAGATATGTATAGGATTATTGAGCACTTTGCCCTTGGAAGGAGGAGACTAGAACTGTTTGGTGAAGACCATAATATTCGAGCCGGTTGGCTTACTGTTGGTAAAGAATTGTCATCTTCAAATTTTAATAAAGAGGCATATGTGAAAAGTTTTGCTGACAAAGATGGGAAAGTTTGGCAGGGAGGTGGGGGAAGAAATCCACCTCCGGAGGCACCTCATCTGGTGGTGACTACTCCTGATATAGAGGCTCTTAGGCCAAAGTCACCAATGAAGAACCAGCAACAAATGCAGCAGCAGCAGCAATCAGTAACCATTTCTTTGACGACTCCTAGCGCATCAAACAGAAGGCCTGCCGGGAATTCCCCGCAGAACCCAACTGCGCTCGGCATCAATCAAGACGCATCTAGCTCAAACCCTTCTACACCAGCCCATTGGGCTTCACCTATGGAGGGTTTCAAGGGACGTGAAGGCTCTGTACTGCCTACAGATGATAAAGTAATGGATATGTACGGGTTTCACGGACCAGCGGCAGCAAGCTATCTAGATTTTGATTCATACAGACAAATGAATATGTTGTAG	3270	0.4804	MDSSDSGRGFSKRERDDEDWEFSDKRKDRSRKFGSNGDEGEGSDGSARRKRSSRTDSDDYDSRSKQGAKKRQEESTLEKLSSWYEDGELDGSDKIARKRDGDADLHGASVAGKDDGKGEGGGGRDKGEPARSSRRKWDEVDAVSVRRAQDKRDSSRDREKSGSARSEHGESKASGGDRVVKSNSKDDRRGDSERGKSKGKSESVGDVGREDRVEKPRHHRNAAGYDVAETWDRSSNVEEDGHVRVRDKSARETGNSNRSRTPERSGKRHQDLENSEMDYERSGSFKRKENESDGYKDDRSKGKDDTWNDRRKDRESSKESWKRRQPGNADKDSKNEESAFDDSRDWELPRHGYERMDNERPHGRFGGRKDVSRGEAVKTSTKYGISNDNYDVIEIQTKFYDYGKSESMSNHPKRTEAHQQYNTKSGANDEEWAYHQEERTRKSDLSGSGTPGDDLKERYADDDYDFYGGRGRGQKGAASARSTGGQSSSSGGSQPQYGNLDSGSFNRAGPQGIKGNRVGRGGRMRPTGRDNQQVAMPMPMMGSPYGPLGMPPPGPMQPLSHGMSPAPGPPISPGVFMSPFNPAVWPGARGVDMNMIGVPPAVSPVPPGPSGPRFNAANIGNPPNPAMYYNQSGSGRGIPPNISTPGFNPTGSMTRGAPPDKTQGGWVPPKSGALGKAPSRGEQNDYSQNFVDTGMRPQNFIRELELTNVVEDYPKLRELIQKKDEIVANSASAPMYYKCDLKEFELSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEIMNLKIEAIADTPSFIFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKPEDMYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKELSSSNFNKEAYVKSFADKDGKVWQGGGGRNPPPEAPHLVVTTPDIEALRPKSPMKNQQQMQQQQQSVTISLTTPSASNRRPAGNSPQNPTALGINQDASSSNPSTPAHWASPMEGFKGREGSVLPTDDKVMDMYGFHGPAAASYLDFDSYRQMNML	1089

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	984	1056	-	-
	Cca02g02227	1089	PANTHER	N6-ADENOSINE-METHYLTRANSFERASE SUBUNIT METTL14	10	1088	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	479	506	-	-
	Cca02g02227	1089	ProSiteProfiles	mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like (MT-A70-like) family profile.	529	992	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	430	444	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	1	376	-	-
	Cca02g02227	1089	PANTHER	N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT	10	1088	IPR045123	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	645	683	-	-
	Cca02g02227	1089	Pfam	MT-A70	755	933	IPR007757	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	414	429	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	454	469	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	985	1041	-	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	1	379	-	-
	Cca02g02227	1089	ProSiteProfiles	MT-A70-like family profile.	714	953	IPR007757	-
	Cca02g02227	1089	MobiDBLite	consensus disorder prediction	404	536	-	-
	Cca02g02227	1089	ProSitePatterns	N-6 Adenine-specific DNA methylases signature.	758	764	IPR002052	GO:0003676\|GO:0008168\|GO:0032259
	Cca02g02227	1089	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	749	903	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02227	Cca-Chr2	42795734	42803457	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02227	K23960		-	gmx:100798100	1857.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g02227	02	42795734	42803457	Cca02g02227	02	42795734	42803457	ECH