Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02217 ATGTCCCAGACCATGAAGTCGAGTCCACGACTCCGAAATTCTTATGTGATTGGTGTGATATCTGTAATGCTGATATTGGGATCACAAAATGTGAAGGTAGCAGAATGCAGGGTAGCAAATGAAGTGAGCAACGTTATTGAATACCCTGCCATAAATTGTCGAAAGCATGGTGCCTTATTGACAGATTTTGGTGGGGTTGGTGATGGCGTTACATCCAACACAAGGGCCTTTCGATATGCAATAAGCAATCTCAGCCAATATGCAACTGATGGGGGTGCCCAACTTGTAGTGCCACCTGGAAGATGGCTAACAGGACCCTTTAATCTCACTAGCCATTTCACTCTTTTTCTCGAATATGGTGCTGTTCTGCTTGCATCTCAGGATGAATCTGAATGGCCACAACTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCCGGTGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCGTTGATGTTGTAATTACAGGTCAAAATGGTACAATTGATGGGCAAGGATCCTATTGGTGGAACAAGTTCCGCATGAGTCAATTGAATCTCACCAGGCCATACACGATTGAGATCATGTACTCTAGTCAAATCCAAATATCAAATCTCACATTGGTCAATTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGCAACATAATAATAAAAGGGCTTACCATTATGGCCCCAGTTGACTCTCCCAACACAGATGGGATAGACCCAGACTCATGTACAAACGTTAGGATTGAGGACTGCTATATTGTCTCCGGTGATGATTGTATTGCAGTAAAAAGTGGGTGGGATGAGTATGGAATTAAATTTGGAATGCCAACCCAACACCTAATCATTAGAAGGATTACTTGCATATCCCCTGATAGTGCCATGATTGCTTTTGGAAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGATCTCACTGCTATCAACACTGAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGGGCATATGTGAAAAACATATTTGTGAAAGGAATGAACCTCAACACCATGAAATATGTATTTTGGATGTCTGGCTCTTATGGATCACACCCTGACCCTCACTTTGATCCCAATGCACTTCCACTCATTACTGGAATAAATTATATGGATGTCATTGCAAGGAACGTCACAAAATCCGCAAGACTTGAAGGGATTTCCAATGACCCTTTCACCGAAATCTGCATTGCTAATGTGACTATCCAAGTGAGTGCGGAGAAAAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAGGGTCAATCCTTACCCTTGTCCTTTGCTGCCAGACAGAGGGAATTTTGATTGTCCTTTTCCAAATAACGTTCTGCCCATTGAAAATGTTCAGTTCAGGACTTGTAATGTCTAA 1434 0.4226 MSQTMKSSPRLRNSYVIGVISVMLILGSQNVKVAECRVANEVSNVIEYPAINCRKHGALLTDFGGVGDGVTSNTRAFRYAISNLSQYATDGGAQLVVPPGRWLTGPFNLTSHFTLFLEYGAVLLASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTNLVDVVITGQNGTIDGQGSYWWNKFRMSQLNLTRPYTIEIMYSSQIQISNLTLVNSPSWFVHPIYSSNIIIKGLTIMAPVDSPNTDGIDPDSCTNVRIEDCYIVSGDDCIAVKSGWDEYGIKFGMPTQHLIIRRITCISPDSAMIAFGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGAYVKNIFVKGMNLNTMKYVFWMSGSYGSHPDPHFDPNALPLITGINYMDVIARNVTKSARLEGISNDPFTEICIANVTIQVSAEKKKLQWNCTDVAGVTSRVNPYPCPLLPDRGNFDCPFPNNVLPIENVQFRTCNV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02217 477 Gene3D - 32 443 IPR012334 -
Cca02g02217 477 SMART pbh1 252 273 IPR006626 -
Cca02g02217 477 SMART pbh1 225 251 IPR006626 -
Cca02g02217 477 SUPERFAMILY Pectin lyase-like 60 451 IPR011050 -
Cca02g02217 477 Pfam Glycosyl hydrolases family 28 156 436 IPR000743 GO:0004650|GO:0005975
Cca02g02217 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 20 476 - -
Cca02g02217 477 PANTHER PECTIN LYASE-RELATED 20 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02217 Cca-Chr2 42675034 42677260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02217 40 475 Glycoside Hydrolase AT3G48950 69.388 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02217 - - gmx:100779166 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02217 02 42675034 42677260 Cca02g02217 02 42675034 42677260 ECH