Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02216 ATGGCGGAAGCCGAAACGTTCGCATTCCAGGCGGAAATCAACCAGCTCCTTAGCCTCATCATCAACACCTTCTACAGCAACAAAGAAATCTTCCTTCGCGAACTTATCAGCAATGCCTCTGACGCTCTGGATAAAATCCGATTTGAGAGTCTCACCGATAAGAGCAAGCTGGATGCTCAGCCAGAGCTCTTCATTAGATTGCTCCCTGACAAGGTTAACAAGACGATCTCCATCATCGACAGTGGCGTCGGCATGACCAAAGCAGATTTGGTGAACAATTTGGGAACCATTGCACGGTCTGGCACCAAGGAATTCATGGAGGCCTTGCAGGCTGGTGCTGACGTCAGCATGATCGGTCAATTCGGCGTTGGTTTCTACTCCGCCTACCTCGTCGCCGAGAAAGTAATCGTCACCACCAAGCACAACGACGATGAACAATACATTTGGGAATCGCAAGCCGGTGGCTCCTTCACCGTTACTAGGGATGTCAATGGCGAACAACTCGGAAGAGGAACTAAGATTACCTTGTTCCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGGAGGATTAAGGATCTTGTGAAGAAACACTCTGAATTCATTAGCTACCCTATTTACCTCTGGACGGAGACGACGACTGAGAAAGAGATCAGTGATGACGAGGATGATGAGCCCAAGAAGGAAGAGGAGGGGGACgttgaggaggttgatgaagaaaaagagaaagagaaggacggtaagaagaagaagaagattaaggaggtttctcacgagtggcaactcattaacaagcagaaaccaatctggttgcgcaagccagaggagattaccaaggaggaatatgcgtcattctacaagagtctcaccaatgactgggaggaccacttggccgttaagcatttttcagtggagggtcagcttgagttcaaggccattttgtttgtgcccagaagagcaccttttgatttgttcgacaccaggaagaagatgaacaacatcaagctgtatgttcggagggtgttcattatggacaactgtgaagagctcattccggagtatcttggatttgtcaagggtgtggttgactctgatgatctcccactcaacatctctcgcgagatgctgcagcagaacaagatcctcaaggtgatcaggaagaaccttgtgaagaagtgcattgagatgttcaacgagatcgcggagaataaagaggattacaacaaattctatgatgctttctcgaagaacttgaagctggggatccatgaggATAGCCAGAACAGAGCGAAGTTGGCTGATTTGCTCAGGTACCACTCTACGAAAAGTGGGGATGAAATGACGAGCCTGAAGGACTATGTTACAAGAATGAAGGAGGGTcagaaggatatttactacatcaccggagagagcaagaaggccgtggagaattctccgtttttggagagactcaagaagaagggctatgaggtgctcttcatggtggatgctattgacgagtatgctgttgggcagctgaaggagtatgacgggaagaagctggtgtctgctaccaaggaagggttgacgttggatgacgagagcgaggaggagaaaaagaagaaagaggagaagaagaagtcttttgaggagctctgcaaGACAATTAAGGAGATATTGGGAGACAAAGTTGAGAAGGTGGTTGTCTCTGATAGAATTGTTGATTCCCCATGCTGTTTGGTGACTGGGGAGTATGGTTGGACTGCGAATATGGAGAGGATCATGAAGGCTCAGGCGTTGAGGGATAGCAGCATGAGTAGCTACATGTCTAGCAAGAAGACCATGGAGATCAACCCGGACAATGGAATCATGGAGGAGCTGAGAAAGAGGGCTGAAGCTGATAAGAATGATAAGTCAGTGAAAGACCTCGTGTTGCTACTCTTTGAGACAGCACTCTTGACTTCTGGTTTCAGCCTTGATGATCCCAACACGTTTGCTGCTAGAATTCACAGGATGCTGAAGCTCGGTCTCAGCATCGATGAAGAGGAGACTGGTGGGGATGAAGATATGCCTCCACTGGAGGAGGATGGTGCCGAGGAGAGCAAGATGGAGGAAGTTGACTAA 2103 0.2934 MAEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLLPDKVNKTISIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVNGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTETTTEKEISDDEDDEPKKEEEGDVEEVDEEKEKEKDGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLTLDDESEEEKKKKEEKKKSFEELCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEETGGDEDMPPLEEDGAEESKMEEVD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02216 700 MobiDBLite consensus disorder prediction 673 700 - -
Cca02g02216 700 Pfam Hsp90 protein 184 696 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca02g02216 700 SMART HKATPase_4 27 182 IPR003594 -
Cca02g02216 700 Gene3D - 264 432 - -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Cca02g02216 700 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Cca02g02216 700 Gene3D - 2 228 IPR036890 -
Cca02g02216 700 MobiDBLite consensus disorder prediction 215 249 - -
Cca02g02216 700 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Cca02g02216 700 Gene3D - 433 520 - -
Cca02g02216 700 CDD HATPase_Hsp90-like 14 202 - -
Cca02g02216 700 Hamap Chaperone protein HtpG [htpG]. 2 667 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca02g02216 700 Coils Coil 227 247 - -
Cca02g02216 700 MobiDBLite consensus disorder prediction 675 700 - -
Cca02g02216 700 Coils Coil 525 545 - -
Cca02g02216 700 Gene3D - 521 671 IPR037196 -
Cca02g02216 700 MobiDBLite consensus disorder prediction 216 240 - -
Cca02g02216 700 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5 213 IPR036890 -
Cca02g02216 700 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cca02g02216 700 SUPERFAMILY Ribosomal protein S5 domain 2-like 265 520 IPR020568 -
Cca02g02216 700 PIRSF HSP90_HTPG 1 700 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca02g02216 700 PANTHER HEAT SHOCK PROTEIN 90-1 1 699 - -
Cca02g02216 700 SUPERFAMILY HSP90 C-terminal domain 544 666 IPR037196 -
Cca02g02216 700 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 699 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02216 Cca-Chr2 42666204 42668991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02216 K04079 - cpap:110810309 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02216 02 42666204 42668991 Cca08g00721 08 13608642 13612694 ECH
Cca02g02216 02 42666204 42668991 Cca02g02216 02 42666204 42668991 ECH