Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02208 ATGGGAATGGGAAGACTCTCCAGTCTCCAATCTCCAATCTCCAAACTCCGTGGCTTCCCCGTTGTGGCCACATCCCACAGATCCACTAATTTTGATGTGCTTGATTTTTCCATTCCAAAATTCTTATCCTCAAACCCCAAAGCTGCTTACTTTTACTTTACCATTTTATTCAACCAACCTACTACAACACTTGCTCACAGTTTTTCTCCACTCCACTTCCGCCAAACTTGCTTGCACATTCTCTCTCTCTGCAACTCACACTTCCTCCAGGAGGGACTATGTGTTCACGGTCCAATCATCAAACTGGCTCTCCAACACGACTTGTATTTGAACAACAATTTGTTGTCCTTGTATGCCAAATGCTTTGGAGTTCGACAAGCACGCCATTTCTTCGATGAAATGCCTCATAAGGATGTTGTGTCATGGACTACGCTTCTCTCTGCTCACACCAGGAATAACCATCATTTTGAGGCCCTTCAATTGTTTGACATGATGCTAGGTTCTGGTCAATGCCCCAATCAGTTCACTTTGTCCAGTGCCTTAAGATCATGTTCTGCCTTGGGACACTTTCAGTCCGGGGCTCAAATTCATGCCTCTGTGGTAAAGCTTGGGTTAGAGCTGAATCCGGTTCTGGGTACCACTTTGCTCGATTTCTACACCAAGTGTGATGGCACTGTGGAGGCACACAAACTGCTTGCTTTTGTTAAGGATGGTGATGTTGTGTCTTGGACAACAATGATCTCTTCATTGGTGGAAACTAGTAAATGGAGTGAAGCTCTACAACTCTATGTCAAAATGATTGAAGCGGGTGTTTACCCGAATGAGTTCACATTTGTTAAACTCTTAGGCGTGTCTTCTTTTCATGGTTTGGGAATGAATTATGGGAAAGTACTGCATGCACAGTTAATCAGATTGGGTGTTGGAATGAATTTGGTGTTGAAGACTGCCATTGTTGATATGTATGCAAAATGCAGACGGATGGAGGACGCTATTAAGGTCTCAAATCAGACACCTGAATATGATGTGTGCTTATGGACTACCATTATTTCTGGATTTGTTCAAAATGTGCAGGTTAGAGAGGCTGTTAATGCATTTCTTGATATGCAACTGTCTGGAATTCTACCAAATAATTTTACATATGCTAGTTTATTGAATGCTAGCACCTCAGTTTTATCATTGGAGTTAGGGAAACAGTTTCATTCACGGCTTATCATGGTTGGATTGGAGGATGATCTTTATGCAGGAAATGCACTGCTTGATATGTACATGAAATGCTCCCACACCGCAACAAATGGTGTGAAAGCTTTCAGAGGTATAGCCTCACCGAATGTCATCTCTTGGACTTCTTTGGTTGCTGGTTTTGTAGAACATGGTTTAGAAGAAGAATCTCTTCGGTTATTTTCTGAGATGCAAGCAGCAGGAGTGCAACCAAATTCCTTTACACTGTCTACTATTCTTGGAGCTTGCAGCAAAATGAAATCTGTTATTCAAACAAAGAAAATCCATGGACGTATCATAAAAACAAAAGCAGACATAGACATAGCTGTTGGGAATGCTCTTGTTGATGCATATGCTGGAGGGGGGATGGCTGATGAAGCATGGTCTGTTATTGGCAAGATGAACCATAGAGATCTCATCACATACACAAGTTTAGCGGCAAGATTAAACCAGAGGGGGGATCACGAAATGGCATTAAAAGTCATCACTCACATGTGTAATGATGGGGTTAAGATGGATGAATATAGCTTGGCAAGTTTTCTATCAGCTGCAGGTAGCTTAGGCACTATGGTAACTGGAAAGCAGCTACATTGTTACTCTGTCAAATCAGGTTTCAAGAGTTGTAACTCGGTTTCAAATAGCCTAGTTCACTTGTACAGCAAGTGTGGCAACATGCACAATGCCTACAAAGCTTTCAAAGATATAAATGAGCCAGATACAGTGTCATGGAATGGTTTGATATCTGGGTTGACATCAACTGGACACATATCCGATGCTCTTTCTGCCTTTGATGACATGAGGTTATCAGGAGTTAAACCCGATTCTTTCACATTCTTATCACTAATTTTTGCTTGCAGCCAAGGTAATTTATTGAATCTGGGTCTTGATTATTTCTATTCCATGGAAAAAACATATGAAATAACTCCAAAGTCGGATCACTATGTGTGTTTAGTTGATCTCCTCAGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTCATTGAAACAATGCCTTTCAAGCCAGATTCTGTAATTTATAAAACTTTACTAAATGCTTGCAACTTACATGGAAATGTGCCACTGGGAGAAGATATGGCAAGGAGATGCCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCCCTGATTTCGGTGACAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTGAGAAGAAGTCCTAGGCAGTGTTGGATGGAGGTAAGAAATAAAATTTATCTCTTCTCTGCAAGAGAGAAGATAGATAAGGATGAGATTAATCAAATGCTGGAGTTTCTTATATCTGAAATAAGGAATAGAGGGTATCCATACCAAGAGAATGAAGACAAATTATACCACTCAGAGCAATTGGCCCTTGCATTTGGTGTTCTTTGTTTACCAACTATGGCTCCAGTACGCATAAACAAGAATTCACTTATCTGCACTCACTGTCATTCTTTTATAATGCTTGTGACACAATTTTTTGATAGGGAGATAATTGTGAGGGATAGGAAACGATTCCATTTCTTCAAGGAAGGGCAGTGTTCATGTAGAGGAGGTCACTCATAA 2820 0.411 MGMGRLSSLQSPISKLRGFPVVATSHRSTNFDVLDFSIPKFLSSNPKAAYFYFTILFNQPTTTLAHSFSPLHFRQTCLHILSLCNSHFLQEGLCVHGPIIKLALQHDLYLNNNLLSLYAKCFGVRQARHFFDEMPHKDVVSWTTLLSAHTRNNHHFEALQLFDMMLGSGQCPNQFTLSSALRSCSALGHFQSGAQIHASVVKLGLELNPVLGTTLLDFYTKCDGTVEAHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGVYPNEFTFVKLLGVSSFHGLGMNYGKVLHAQLIRLGVGMNLVLKTAIVDMYAKCRRMEDAIKVSNQTPEYDVCLWTTIISGFVQNVQVREAVNAFLDMQLSGILPNNFTYASLLNASTSVLSLELGKQFHSRLIMVGLEDDLYAGNALLDMYMKCSHTATNGVKAFRGIASPNVISWTSLVAGFVEHGLEEESLRLFSEMQAAGVQPNSFTLSTILGACSKMKSVIQTKKIHGRIIKTKADIDIAVGNALVDAYAGGGMADEAWSVIGKMNHRDLITYTSLAARLNQRGDHEMALKVITHMCNDGVKMDEYSLASFLSAAGSLGTMVTGKQLHCYSVKSGFKSCNSVSNSLVHLYSKCGNMHNAYKAFKDINEPDTVSWNGLISGLTSTGHISDALSAFDDMRLSGVKPDSFTFLSLIFACSQGNLLNLGLDYFYSMEKTYEITPKSDHYVCLVDLLSRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPSDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEVRNKIYLFSAREKIDKDEINQMLEFLISEIRNRGYPYQENEDKLYHSEQLALAFGVLCLPTMAPVRINKNSLICTHCHSFIMLVTQFFDREIIVRDRKRFHFFKEGQCSCRGGHS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 618 838 IPR011990 GO:0005515
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 285 391 IPR011990 GO:0005515
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 258 571 - -
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 76 263 - -
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 201 284 IPR011990 GO:0005515
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 258 571 - -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 157 481 - -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 76 263 - -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 157 481 - -
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 480 859 - -
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 62 195 IPR011990 GO:0005515
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 502 601 IPR011990 GO:0005515
Cca02g02208 939 Gene3D Tetratricopeptide repeat domain 392 501 IPR011990 GO:0005515
Cca02g02208 939 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Cca02g02208 939 TIGRFAM PPR: pentatricopeptide repeat domain 647 681 IPR002885 -
Cca02g02208 939 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Cca02g02208 939 TIGRFAM PPR: pentatricopeptide repeat domain 344 376 IPR002885 -
Cca02g02208 939 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Cca02g02208 939 Pfam DYW family of nucleic acid deaminases 868 936 IPR032867 GO:0008270
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Cca02g02208 939 Pfam PPR repeat family 442 490 IPR002885 -
Cca02g02208 939 Pfam PPR repeat family 341 386 IPR002885 -
Cca02g02208 939 Pfam PPR repeat family 137 184 IPR002885 -
Cca02g02208 939 Pfam PPR repeat family 239 282 IPR002885 -
Cca02g02208 939 Pfam PPR repeat family 644 691 IPR002885 -
Cca02g02208 939 Pfam PPR repeat 619 641 IPR002885 -
Cca02g02208 939 Pfam PPR repeat 518 543 IPR002885 -
Cca02g02208 939 Pfam PPR repeat 546 576 IPR002885 -
Cca02g02208 939 Pfam PPR repeat 720 743 IPR002885 -
Cca02g02208 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cca02g02208 939 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 480 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02208 Cca-Chr2 42592353 42595284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02208 158 934 Glycoside Hydrolase AT3G49170 31.677 9.41e-140 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02208 - - gmx:100791770 1514.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02208 02 42592353 42595284 Cca02g02208 02 42592353 42595284 ECH