Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02195 ATGTTCAGCTCTGTTCTATGCAGTTTAAAAGTTCACTGCAATAAGAAGGACATGAACACACTCCTACACTTCAGACAAGGAGTTATAGATCCGTCAGGCTTGCTGTCCTCATGGTTCCCTGAGCTAGACTGTTGTCAATGGAAAGGAGTTAAGTGTGACAATATAACAGGTGAACTCAGCTTGACTTTGCTAGAACTTCAATTCTTGAGCTACTTGGATTTGAGCAACAATGACTTTAAAGCTATCAAGTACAATTCAATAAGTAGTCAGAAATGTGATGACTTGTCAAGAGATAACTCCCATCTATGTGTAAACTCCACCAACCTTCATTATCTTGATTTATCATATAATTATAATCTTCTTGTTGATAATCTTCATTGGTTCTCACGTCTTTCCTCATTACAATATCTTAACCTTGGTGGTGTTCATCTTCACAAGGAAATTGATTGGCTTCAATCAGTCAACATGCTCCCTTCACTTTTAGAGTTGCACTTGGAGAGTTGTCAACTTGAAAACATCTATCCATCTCTTCACTATGCTAATTTTACATCACTTCAAGTTCTAAATCTCGCAAACAACAATTTTGTATCTGAGTTGCCTAGTTGGTTATTCAATCTTAGTTGTGACATCTCTTATATTAACCTTGGGCAAAATGAGATACATGGTCAACTACCCAAAACATTGCCAAATCTTAGAAGCATTAAGTCCTTGGTTTTATCTTTTAATTATCACAAGGGAGTCATTCCAAATTGGTTAGGACAACTTGAACAACTACAAAATCTTGATCTTTCTCATAATTTTTTTTCTGGTTCAATCCCTGCAAGTTTAGGAAATCTATCATCCTTGATCTTGTTGACGCTTGAGTCAAATGAGTTGAATGGAAATCTTCCGGACAATCTTGGGCAACTCTTCAATTTGAAGAAACTTGCAGTTTCAGAAAATATCTTAACTGGAAATGTGTCGGAAAGAAATTTGCTTTCATTTTCAAATTTGAAGTACTTTTCCATGAATTCGCCTTCCCTAGTCTTTGATTTTGATCCGGAATGGGTCCCTCCTTTTCAACTCAGAGTTATTATTTTGGGTCATGTGAGAGAAAAACTTCCCGCATGGTTATCGACACAAAATTCTCTAAAATATCTATCAATTGTGGACTCAACTGCTTCATTTGAACCTCTTGAGAAGTTTTGGAACTTTGCTACTCAACTTCAATATTTCAATCTCGTGAACAACACCATCAACGGAGACATATCAAATGTGCTGCTAAGTTCGACATTTGTTTGgGACCAACTTGGTTTAACCAATCTTAGCTACATTGGCAATCATGGCCTTTGTGGAGCTCCGCTTACAAAGATATGCCCACAAGATGAAAAATCCCACAATACAAAACCTAAAGGAGAAGATAATGATGATAAATCTGAAGTATATTCTTGTTTCTACATGGGGCTTGGAATTGGATTTTTTGTGGGATTCTGGAGTGTTTTGGGTGCCATTTTGTTCAACAGGAGATGTAGACATGCTTATTTTAGATTTCTACATCGAATGTATGACATTATGACCCAAAAGATGAACTCAATCTAA 1578 0.3638 MFSSVLCSLKVHCNKKDMNTLLHFRQGVIDPSGLLSSWFPELDCCQWKGVKCDNITGELSLTLLELQFLSYLDLSNNDFKAIKYNSISSQKCDDLSRDNSHLCVNSTNLHYLDLSYNYNLLVDNLHWFSRLSSLQYLNLGGVHLHKEIDWLQSVNMLPSLLELHLESCQLENIYPSLHYANFTSLQVLNLANNNFVSELPSWLFNLSCDISYINLGQNEIHGQLPKTLPNLRSIKSLVLSFNYHKGVIPNWLGQLEQLQNLDLSHNFFSGSIPASLGNLSSLILLTLESNELNGNLPDNLGQLFNLKKLAVSENILTGNVSERNLLSFSNLKYFSMNSPSLVFDFDPEWVPPFQLRVIILGHVREKLPAWLSTQNSLKYLSIVDSTASFEPLEKFWNFATQLQYFNLVNNTINGDISNVLLSSTFVWDQLGLTNLSYIGNHGLCGAPLTKICPQDEKSHNTKPKGEDNDDKSEVYSCFYMGLGIGFFVGFWSVLGAILFNRRCRHAYFRFLHRMYDIMTQKMNSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02195 525 SUPERFAMILY RNI-like 157 453 - -
Cca02g02195 525 Pfam Leucine rich repeat 212 266 IPR001611 GO:0005515
Cca02g02195 525 Gene3D Ribonuclease Inhibitor 176 271 IPR032675 -
Cca02g02195 525 Gene3D Ribonuclease Inhibitor 326 454 IPR032675 -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 228 421 - -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 8 250 - -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 431 511 - -
Cca02g02195 525 SMART LRR_typ_2 255 278 IPR003591 -
Cca02g02195 525 SMART LRR_typ_2 66 89 IPR003591 -
Cca02g02195 525 SMART LRR_typ_2 157 180 IPR003591 -
Cca02g02195 525 SMART LRR_typ_2 182 206 IPR003591 -
Cca02g02195 525 SMART LRR_typ_2 279 303 IPR003591 -
Cca02g02195 525 Pfam Leucine rich repeat N-terminal domain 15 53 IPR013210 -
Cca02g02195 525 Gene3D Ribonuclease Inhibitor 13 175 IPR032675 -
Cca02g02195 525 Gene3D Ribonuclease Inhibitor 272 325 IPR032675 -
Cca02g02195 525 Coils Coil 522 525 - -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 431 511 - -
Cca02g02195 525 SUPERFAMILY L domain-like 13 218 - -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 228 421 - -
Cca02g02195 525 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 8 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02195 Cca-Chr2 42468646 42471269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02195 53 453 Receptor kinase-like Gene Family AT3G56370 27.540 2.26e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02195 - - gmx:100785934 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02195 02 42468646 42471269 Cca02g02195 02 42468646 42471269 ECH