Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02193 ATGGATGCCACTCTCTCAGGTATAAAATTTAAATCCCTTTTACTTTGCTTACTAGCTACAATCATGTTCAACTCTATCAAGTGCAGTTCCAAGATTCACTGCAACGAGAAAGACATGAAAACACTCCTACACTTCAAAACAGGAGTCACAGATCCTTTAGGTGTACTCTCCTCATGGTTTCCAAAATTAGACTGTTGTCAATGGAAAGGTGTCAAGTGTGATAATATCACAGGTAGAGTTACACAACTTAATCTCCCTTGTCATACAAATCAACCTAAATTTCTTGATTTTGGAGACAAGGACGACAAATCACACTGTCTAACAGGTGAATTCAGTATTACTTTGTTGGACCTTGAATTTTTAAGCTACTTGAATTTGAGCAACAATGACTTCAAGTCTATGCAATATAATTCAATGAGTAGTCACAAGTGCAATGACTTGTCAAGAGGTAATTTTCCTTATCAGTGTGGAAACTTCACCAACCTCCATTATCTTGATTTGTCATATAATTATGAACTTTTTGTCCATAGTCTCCATTGGATTTCCTGTCTTTCCTCATTACAATATCTTAACCTTGGTGGTGTTCTTCTTCACAAGGAAATTGATTGGCTTCAAACAGTCATTATGCTCCCTTCACTTTTAGAGTTGCACTTGCAAGGTTGTCAACTTGAAAACATGTATCCACTTCTTTGGTATGCTAATTTTACTTCACTTCAAGTTTTAAATCTTGCAGACAATCAATTTCTATCTGAGTTGCCTAGATGGTCATTTAATCTTAGTTGTCACATCTCTCATATTGACCTCAGTCAAAATCAGATACACAACCAGCTACCAAAAACATTGCCAAATCTTAGAAGTGTTAAATCCTTGGTTTTACGTGATAATTCTCTCAAAGGACCCATTCCAAGTTGGTTGGGACAACTTGAACAACTACAAGAACTTGACCTGTCTCATAACTTCTTTTTTGGCCAAATCCCCACAAGTTTGGGAAACATGTCATCCTTGATTAAATTGATACTCGAGTCAAATGAGTTGAATGGAAAACTTCCAGAGGATCTTGGACAACTCTTCAACTTGGAGAGCCTTCGAGTTTCAAAAAACTCCTTTACTGGAATTGTCTCTGAAAGAAATTTACTTTCTTTAACAAATTTAAAGCACTTTTCCATCAGTTCACCTACCCTGATCTTTGACTTTGATCCTAAATGGATCCCTCCTTTTCAACTTCTAAATATTGAATTGGGCAATTTGAAATTCAAACTTCCAACATGGTTGTTCACCCAAAGTTCTCTAAAGTATCTAACCATTGTAGACTCAACTGCTTCATTTGAACCTCTTGACAAGTTTTGGAACTTTGCTACTAAACTTGAATTTATCAAAGTGGCAAACAACACAATCAATGGGGACTTATCAAATGTACCCAACTTCAAGGTTTTACGAATCTTAGCTATATGGGCAATCCTGGTCTCTGTGGAGCTCCACTCACAAAGATATGCTTACAAGATGAAAAATCCAACAATACAAAAACAGTGGAAAAAGATGACAACGATGATAAATCTGAAGTATATTCTTGGTTCTACACGGGAATGGGAATTGGATTTGCAATGGGATTTTGGGGAGTTTTTGGCACCATTTTGTTCAACAGGACATGCAGGCATGCTTATTTTAGATTTCTGCACCGAGTGCATGACTTTGTGA 1695 0.3664 MDATLSGIKFKSLLLCLLATIMFNSIKCSSKIHCNEKDMKTLLHFKTGVTDPLGVLSSWFPKLDCCQWKGVKCDNITGRVTQLNLPCHTNQPKFLDFGDKDDKSHCLTGEFSITLLDLEFLSYLNLSNNDFKSMQYNSMSSHKCNDLSRGNFPYQCGNFTNLHYLDLSYNYELFVHSLHWISCLSSLQYLNLGGVLLHKEIDWLQTVIMLPSLLELHLQGCQLENMYPLLWYANFTSLQVLNLADNQFLSELPRWSFNLSCHISHIDLSQNQIHNQLPKTLPNLRSVKSLVLRDNSLKGPIPSWLGQLEQLQELDLSHNFFFGQIPTSLGNMSSLIKLILESNELNGKLPEDLGQLFNLESLRVSKNSFTGIVSERNLLSLTNLKHFSISSPTLIFDFDPKWIPPFQLLNIELGNLKFKLPTWLFTQSSLKYLTIVDSTASFEPLDKFWNFATKLEFIKVANNTINGDLSNVPNFKVLRILAIWAILVSVELHSQRYAYKMKNPTIQKQWKKMTTMINLKYILGSTREWELDLQWDFGEFLAPFCSTGHAGMLILDFCTECMTL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02193 564 SMART LRR_typ_2 118 142 IPR003591 -
Cca02g02193 564 SMART LRR_typ_2 308 332 IPR003591 -
Cca02g02193 564 SMART LRR_typ_2 210 233 IPR003591 -
Cca02g02193 564 SMART LRR_typ_2 356 381 IPR003591 -
Cca02g02193 564 SMART LRR_typ_2 235 259 IPR003591 -
Cca02g02193 564 Gene3D Ribonuclease Inhibitor 325 517 IPR032675 -
Cca02g02193 564 Gene3D Ribonuclease Inhibitor 230 324 IPR032675 -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 174 309 - -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 300 492 - -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 21 170 - -
Cca02g02193 564 Pfam Leucine rich repeat 263 319 IPR001611 GO:0005515
Cca02g02193 564 SUPERFAMILY RNI-like 210 480 - -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 21 170 - -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 174 309 - -
Cca02g02193 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 300 492 - -
Cca02g02193 564 Gene3D Ribonuclease Inhibitor 34 229 IPR032675 -
Cca02g02193 564 SUPERFAMILY L domain-like 34 260 - -
Cca02g02193 564 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02193 Cca-Chr2 42451867 42454543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02193 103 390 Receptor kinase-like Gene Family AT5G01890 27.740 9.34e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02193 - - gmx:100785934 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02193 02 42451867 42454543 Cca02g02193 02 42451867 42454543 ECH