Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02192 ATGCAATATAATTCAACGAGTAGCAAAAAATGTGACGACTTGTCAGGAGGTAACCCTCCCCATATGTGTGGAAACTCGACCAACCTCCATTATCTTGATTTATCCTATAATTATGATCTTCTTGTCGATAATCTCCATTGGCTTTCACGTCTTTCCTCATTACAATATCTTAGCCTTGGTGGTGTTCATATTCATAGGGAAATTGATTGGATTCAATCAGTCACTATGCTTCCTACACTTCTAGAGTTACATTTAGAGAGTTGTCAACTTGAAAACATTTATCCATCTCTTCAATATGCTAATTTTACTTCACTTCAAGTTCTAAATCTAGCTAAAAACAATTTTGCGTCCGAGTTGCCTAGTTGGTTATTCAATCTTAGTCGTGACATCTCTCATATTGACCTTAGCCAAAATAAGATGCATAGCCAATTACCTAAAACATTGCCAAATCTTAGAAGATTAAAGTCCTTGGTTTTATCTCATAATTATCTCAAAGGACCCATTCCAAATTGGTTAGGACAACTTGAACAACTACAAAAACTTGATCTTTCTCATAACTTTTTTTCTGGTCCAATCCCAACAAGTTTGGGAAACGTATCATCATTGGTCGAGTTGATACTCGAGTCAAATGAATTGAATGGAAATCTTCCAGACAAACTTGGGCAACTCATCAACTTGGAGACCCTTCAAATTGCAGAAAATGTCTTGACTGGAAATGTATCTAAAAGAAATTTACTTTCATTTTCCAATTTGAAGCAGTTTTCCATGGGTTCTCCGGCCTTGGTCTTTGATTTTGATCCTGAATGGGTGCCTCCATTTCAACTTTTACGTATTAGATTGGACTATATGAGAGACAAACTTCCTGCATGGCTATTCACACAGACTTCTCTAAAATATCTAACCATTGAAGACTCATCTGCTTCATTTGAACCTCTTGACAAGTTTTGGAATTTTTCTTCTCAACTTGAATTTATCTCTTTGCAAAACAACACAATCAATGGGGACATGTCAAATGTGTTGTTAAACTCGAAAGTTGTTTGGCTAGTGGCCAATAATTTAAAAGGTGGCATGCCTCATATATCATCAGAAGTGGTTGTTTTACAATTGCGTAATAACTCACTGTCAGGATCACTTTCTCCTACATTGTGTCACAATAATATGGCAGATAAAAGCAATTTAGTGCAATTGAACGTGGCTTATAACCATTTATCTGGAGAACTAACAAATTGTTGGAATAATTGGAAATCATTGGTTCTTATTAATTTAGGACACAACAACCTAACAGGCAAGATTCCTAATTCAATCTTCTTGTCTAACCTTCGTTTTTTGCATCTTGGAAGCAATAAGTTCTTTGGAGAGGTACCGTTTTCTATAAAAAACTGCAAGAATCTTTGGATACTCGATCTTGGTCACAATAATCTTTCTGGAGTAATACCAAGCTTGGGGCAAAGTGTTAAAGGTCTTAAATTGGGACCTAATCATTTCGGTGGAAATATTCCAACACAGATATGCCAACTTCGTTCTTTAATGGTGATGGATATTTCAAGTAATAGATTATCAGGACCAATACCCAATTGCTTACATAACATCACAGCCATGCTTTCTATTTATGTTTCAACTCGAAGAGTCGGCTTTATACTTCATTTTTCAGGTTTTCACATAAAAATTATCAGCAGCATTCGGATTCTTATAAAAGGAAATGAGTTATCATATGTTGATTTGATGACTGTGATTGATCTCTCAAACAACAAATTGTCTGGAAGTCTGCCTTCAGAGATGTTTATGTTGTCTGGATTACAGTCCTTGAATTTGTCCCATAATCAATTCATGGGAACCATACCACAAGAGATTGGTAACTTGAAACCATTGGAGTCCATCGATCTCTCAAGAAATAATTTCTCTGGAGAAATTCCTCAGACCATGTCTATCTTGCATTATCTCGAGGTATTGAATTTGTCATTCAACAATTTTGAGGGAAAAATCCCATTAGGGACCCAACTTGGTTTTACAAACCTTAGCTATATCGGCAATCCTGATCTCTGTGGAGTCCCACTTACAAAGACATGTTCACAAGATGAAAATTCCAACACTACAAAGCCCATTGGAGAAGAAGATAATGATGATAGTGATAAATCAGAAGTATATTCGTGGTTCTGCATGGGTTTGGGAATTGGATTTGTCGTTGGATTTTGGGGAGTTCTGGTGGGAGCCATTTTCTTCAACAGGAGATGCAGCCATGATTACATCCATTAA 2253 0.3631 MQYNSTSSKKCDDLSGGNPPHMCGNSTNLHYLDLSYNYDLLVDNLHWLSRLSSLQYLSLGGVHIHREIDWIQSVTMLPTLLELHLESCQLENIYPSLQYANFTSLQVLNLAKNNFASELPSWLFNLSRDISHIDLSQNKMHSQLPKTLPNLRRLKSLVLSHNYLKGPIPNWLGQLEQLQKLDLSHNFFSGPIPTSLGNVSSLVELILESNELNGNLPDKLGQLINLETLQIAENVLTGNVSKRNLLSFSNLKQFSMGSPALVFDFDPEWVPPFQLLRIRLDYMRDKLPAWLFTQTSLKYLTIEDSSASFEPLDKFWNFSSQLEFISLQNNTINGDMSNVLLNSKVVWLVANNLKGGMPHISSEVVVLQLRNNSLSGSLSPTLCHNNMADKSNLVQLNVAYNHLSGELTNCWNNWKSLVLINLGHNNLTGKIPNSIFLSNLRFLHLGSNKFFGEVPFSIKNCKNLWILDLGHNNLSGVIPSLGQSVKGLKLGPNHFGGNIPTQICQLRSLMVMDISSNRLSGPIPNCLHNITAMLSIYVSTRRVGFILHFSGFHIKIISSIRILIKGNELSYVDLMTVIDLSNNKLSGSLPSEMFMLSGLQSLNLSHNQFMGTIPQEIGNLKPLESIDLSRNNFSGEIPQTMSILHYLEVLNLSFNNFEGKIPLGTQLGFTNLSYIGNPDLCGVPLTKTCSQDENSNTTKPIGEEDNDDSDKSEVYSWFCMGLGIGFVVGFWGVLVGAIFFNRRCSHDYIH 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02192 750 SMART LRR_typ_2 151 175 IPR003591 -
Cca02g02192 750 SMART LRR_typ_2 437 461 IPR003591 -
Cca02g02192 750 SMART LRR_typ_2 199 223 IPR003591 -
Cca02g02192 750 SMART LRR_typ_2 596 620 IPR003591 -
Cca02g02192 750 SMART LRR_typ_2 102 126 IPR003591 -
Cca02g02192 750 SMART LRR_typ_2 462 484 IPR003591 -
Cca02g02192 750 SUPERFAMILY L domain-like 18 261 - -
Cca02g02192 750 SUPERFAMILY L domain-like 486 685 - -
Cca02g02192 750 Gene3D Ribonuclease Inhibitor 241 692 IPR032675 -
Cca02g02192 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 24 175 - -
Cca02g02192 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 159 749 - -
Cca02g02192 750 MobiDBLite consensus disorder prediction 689 709 - -
Cca02g02192 750 Gene3D Ribonuclease Inhibitor 10 217 IPR032675 -
Cca02g02192 750 Pfam Leucine rich repeat 131 186 IPR001611 GO:0005515
Cca02g02192 750 SUPERFAMILY L domain-like 284 531 - -
Cca02g02192 750 Pfam Leucine Rich Repeat 506 529 IPR001611 GO:0005515
Cca02g02192 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 24 175 - -
Cca02g02192 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 159 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02192 Cca-Chr2 42436622 42438874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02192 71 740 Receptor kinase-like Gene Family AT4G04220 29.931 4.77e-68 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02192 - - gmx:102667809 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02192 02 42436622 42438874 Cca02g02192 02 42436622 42438874 ECH