Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01718 ATGGCAGATCAAACCCATGATTCAGGATCCGTTTCTGTTGGAACTTCACAAGAAGGAAGGAAGCTTCCAAACTTTCTGCTATCTGTGAGGCTAAAGTATGTGAAGCTTGGGTATCACTGCTTGATCTCAAATGCTATGTACCTTATGCTCATACCCCTTATCGGGCTAGCTTCTGCTCATCTATCAACGATCTCTTACCAAGATGTTGTTCAACTATGGGAAAGTCTCAAGTTCAATCTTGTGTGGGTGACTCTATGTGTTAGTCTTATAGTATTCCTTGCCACCTTTTACTTTATGAGCCGCCCAAGAGGTATTTACTTGGTGGATTTTGCATGTTATAAGCCTGAGCCAAACTGCACTTGCACAAGGGAGACTTTCATGGACAGGTCCGTCAATGCTGGTGCGTTTTCAGAGGAGAACTTGGCCTTTCAGAAGAGGATAATCGAGAGGTCTGGTTTGGGCCAGAAGACTTACTTGCCTTCTGCAATCTTGAGTGTCCCTGCAAACCCTTGTATGGCTGAAGCTAGAAAAGAAGCTGAGCAAGTCATGTTTGGAGCCATTGACCAGCTTCTCCAGAAAACTGGGGTCAAGGCTAAGGATATTGGGATTTTGGTGGTCAATTGCAGTTTGTTCAATCCCACACCATCTCTCTCTGCCATGATTGTCAACCACTACAAGTTGAGAGGGAATATCCTAAGTTATAACCTAGGTGGCATGGGTTGCAGTGCTGGCCTTATCGCTGTAGACCTTGCCAAACAGCTCCTCCAGGTTCATCCAAACTCTTATGCCTTAGTGGTGAGCATGGAGAACATCACTCTCAACTGGTATTTTGGCAACAACAGGTCAATGTTAGTCTCAAATTGTCTCTTTAGAATGGGTGGAGCTGCGGTTCTCCTCTCCAACAGGCCTTCTGATCGCAGAAGAGCCAAATACCAACTGATCCATACAGTGCGTACTCATAAGGGTGCAGATGACAAATGTTACGGTTGTGTGTTCCAAGAAGAAGATGAGCAGAAATCAATTGGTGTGGCACTTTCAAAGGACTTAATGGCTGTTGCTGGAGAAGCCCTCAAGACCAATATCACAACACTTGGCCCATTAGTCCTTCCTATGTCAGAGCAACTATTGTTCTTTGCAACTTTGGTGGCTAGAAAAGTGTTGAAGATGAAAATAAAGCCATACATCCCAGACTTCAAGCTAGCTTTTGAGCACTTTTGCATCCATGCTGGAGGAAGAGCAGTGTTGGATGAGTTGGAGAAAAACCTTGAACTCACTGATTGGCACATGGAACCTTCAAGGATGACTCTGAACAGGTTTGGCAACACTTCTAGCAGTTCCTTGTGGTATGAGTTGGCGTACACTGAAGCTAAAGGGAGGATCAAGAAGGGTGACAGGACATGGCAGATTGCATTCGGTTCAGGTTTCAAGTGTAACAGTGCTGTGTGGCGTGCACTGAGGACCATTAATCCTGCAAAGGAGAAAAATCCTTGGATGGATGAGATTCATGAGTTTCCCGTTCATGTGCCTAAGGTGGCAACCATTAGTTCCTAA 1551 0.4507 MADQTHDSGSVSVGTSQEGRKLPNFLLSVRLKYVKLGYHCLISNAMYLMLIPLIGLASAHLSTISYQDVVQLWESLKFNLVWVTLCVSLIVFLATFYFMSRPRGIYLVDFACYKPEPNCTCTRETFMDRSVNAGAFSEENLAFQKRIIERSGLGQKTYLPSAILSVPANPCMAEARKEAEQVMFGAIDQLLQKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNILSYNLGGMGCSAGLIAVDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNRPSDRRRAKYQLIHTVRTHKGADDKCYGCVFQEEDEQKSIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVLKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELTDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVHVPKVATISS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01718 516 CDD CHS_like 87 482 - -
Cca02g01718 516 Gene3D - 112 484 IPR016039 GO:0016746
Cca02g01718 516 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 516 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca02g01718 516 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 483 IPR013747 -
Cca02g01718 516 PANTHER 3-KETOACYL-COA SYNTHASE 18 513 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca02g01718 516 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca02g01718 516 SUPERFAMILY Thiolase-like 290 486 IPR016039 GO:0016746
Cca02g01718 516 PANTHER 3-KETOACYL-COA SYNTHASE 18 513 - -
Cca02g01718 516 SUPERFAMILY Thiolase-like 91 309 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01718 Cca-Chr2 36170804 36173798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01718 20 514 Miscellaneous Gene Families AT2G26640 75.758 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01718 K15397 - gmx:100782027 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01718 02 36170804 36173798 Cca02g01718 02 36170804 36173798 ECH