Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01087 ATGGCCGGAAAGGGAGGGAAGGGGCTTCTTGCAGCGAAAACCACAGCTGCTAacaaggacaaagacaaggacaagaagagacCTATTTCTCGCTCTTCTCGTGCTGGAATCCAGTTTCCTGTGGGTCGAATCCACAGACAGCTGAAACAAAGGGTCCAGGCAAATGGACGTGTTGGGGCCACTGCTGCAGTATATTTGGCTTCAATTCTTGAGTATCTGACAGCAGAGGTTCTTGAACTGGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAGAGGATAACACCAAGGCATTTGCAGCTGGCTATTAGGGGAGATGAGGAGTTGGACACCCTTATTAAGGGTACCATTGCTGGTGGTGGTGTCATTCCTCACATTCATAAGTCCCTCATCAACAAAACCTCCAAGGAATGA 411 0.4574 MAGKGGKGLLAAKTTAANKDKDKDKKRPISRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01087 136 MobiDBLite consensus disorder prediction 16 31 - -
Cca02g01087 136 MobiDBLite consensus disorder prediction 1 36 - -
Cca02g01087 136 PANTHER HISTONE H2A 2 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 Pfam C-terminus of histone H2A 106 135 IPR032454 -
Cca02g01087 136 SMART h2a4 16 136 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 CDD H2A 27 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 PANTHER HISTONE H2A 2 134 - -
Cca02g01087 136 PRINTS Histone H2A signature 27 49 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 PRINTS Histone H2A signature 57 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 PRINTS Histone H2A signature 72 85 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 PRINTS Histone H2A signature 86 100 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 PRINTS Histone H2A signature 113 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca02g01087 136 Pfam Core histone H2A/H2B/H3/H4 15 104 IPR007125 GO:0003677
Cca02g01087 136 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982
Cca02g01087 136 SUPERFAMILY Histone-fold 13 113 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01087 Cca-Chr2 27965231 27966919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01087 K11251 - gmx:100782374 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01087 02 27965231 27966919 Cca02g01087 02 27965231 27966919 ECH
Cca03g02161 03 42205150 42206651 Cca02g01087 02 27965231 27966919 PCT