Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00939 ATGGGTCAAGGAACTCCGGGCGGCATGAACCGCCAGGGCGATCGGAAGCCGGATGGCGGCGACAAGAAGGAGAAGAAGTTCGAGCCGGCGGCTCCGCCGGCGCGCGTGGGGCGGAAACAGCGGAAGCAGAAGGGACCGGAGGCGGCGGCGCGTCTGCCGACGGTGACTCCGGTGACGAAGTGCAAGCTGAGGCTGCTGAAGCTGGAGCGAATCAAGGACTACCTCTTGATGGAGGAGGAGTTCGTCGCGAATCAGGAGCGCCTCAAGCCTCAGGAGGAGAAGGCCGAGGAAGATAGATCTAAGGTCGATGATCTTCGAGGCTCTCCGATGAGCGTCGGTAACCTCGAAGAGCTCATCGACGAGAATCACGCCATTGTTTCCTCCTCCGTGGGACCTGAGTACTACGTTGGAATCTTGTCTTTCGTCGATAAGGATCAGTTGGAGCCTGGTTGTGCTATCTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTATCTGTCATGAAGGTTGAGAAGGCTCCTCTGGAATCTTATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTACCCCTGACGCATCCTGAGCTATATGAAGACATTGGTATCAAGCCTCCAAAGGGGGTCATATTATATGGAGAACCTGGAACTGGGAAGACCTTGCTTGCGAAGGCTGTGGCAAACTCAACATCAGCAACATTCTTACGTGTCGTTGGTAGTGAATTGATACAAAAATACTTGGGAGATGGCCCAAAACTAGTGAGGGAACTTTTCAGAGTTGCGGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTAGCAACCAACAGAATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGAATTGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATTTTCCAGATACATACATCGAGGATGACATTAGCTGATGATGTAAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGTTTACTTGCTCTAAGAGAACGCCGAATGAAGGTGACTCATGCCGACTTTAAGAAAGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCGGAAGGGCTGTATATGTGA 1332 0.476 MGQGTPGGMNRQGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPVTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00939 443 MobiDBLite consensus disorder prediction 87 105 - -
Cca02g00939 443 Pfam ATPase family associated with various cellular activities (AAA) 225 358 IPR003959 GO:0005524|GO:0016887
Cca02g00939 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Cca02g00939 443 MobiDBLite consensus disorder prediction 1 52 - -
Cca02g00939 443 MobiDBLite consensus disorder prediction 87 107 - -
Cca02g00939 443 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 78 430 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cca02g00939 443 MobiDBLite consensus disorder prediction 14 32 - -
Cca02g00939 443 Pfam Proteasomal ATPase OB C-terminal domain 112 165 IPR032501 -
Cca02g00939 443 CDD AAA 191 358 - -
Cca02g00939 443 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 16 443 - -
Cca02g00939 443 Gene3D - 110 177 IPR012340 -
Cca02g00939 443 ProSitePatterns AAA-protein family signature. 328 346 IPR003960 GO:0005524|GO:0016887
Cca02g00939 443 Gene3D - 363 437 - -
Cca02g00939 443 Pfam AAA+ lid domain 380 424 IPR041569 -
Cca02g00939 443 SMART AAA_5 221 360 IPR003593 -
Cca02g00939 443 Gene3D - 178 358 IPR027417 -
Cca02g00939 443 PANTHER BNAA08G13550D PROTEIN 16 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00939 Cca-Chr2 25408668 25413325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00939 186 428 Miscellaneous Gene Families AT3G47060 44.355 3.40e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00939 K03062 - gmx:100783293 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00939 02 25408668 25413325 Cca02g00939 02 25408668 25413325 ECH
Cca03g02282 03 43769687 43773829 Cca02g00939 02 25408668 25413325 PCT