Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00393 ATGTTGTTGTTTACAATTGGTTTGAAGGATCGAGCAAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTGCCGACAAGAAGACAAACCTCGTACTGTAAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATTGTAAAACAACTGGGTTTGGAGAATGGGCAGTCTGTGGAGATGGGTACCATACATGCAGGGGACTTTATGAGGCGATTCTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATATATCATAACTCAACTTTCTGATGATAAGAAACCTCTCAAAGATATATCGATTGCTACAGGTGTTGCTGAAGGAACGATTAGGAACTCCTACAAGGATCTCTATCCCCATGTTTCAAAAATAATACCAAATTGGTATGCCAAGGAGGAGGATTTAAAGAACCTTTGCAGCCCTTGA 588 0.398 MLLFTIGLKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00393 195 Pfam Transcription factor TFIIB repeat 9 68 IPR013150 GO:0017025
Cca02g00393 195 Pfam Transcription factor TFIIB repeat 87 173 IPR013150 GO:0017025
Cca02g00393 195 CDD CYCLIN 90 172 IPR013763 -
Cca02g00393 195 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 7 195 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 CDD CYCLIN 12 68 IPR013763 -
Cca02g00393 195 ProSitePatterns Transcription factor TFIIB repeat signature. 27 42 IPR023486 -
Cca02g00393 195 PRINTS Transcription initiation factor IIB signature 127 143 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 PRINTS Transcription initiation factor IIB signature 159 173 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 PRINTS Transcription initiation factor IIB signature 62 77 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 PRINTS Transcription initiation factor IIB signature 35 54 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 PRINTS Transcription initiation factor IIB signature 95 113 IPR000812 GO:0006352|GO:0070897
Cca02g00393 195 Gene3D - 91 194 - -
Cca02g00393 195 SUPERFAMILY Cyclin-like 9 79 IPR036915 -
Cca02g00393 195 SMART cyclin_7 1 75 IPR013763 -
Cca02g00393 195 SMART cyclin_7 94 173 IPR013763 -
Cca02g00393 195 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 7 195 - -
Cca02g00393 195 Gene3D - 3 78 - -
Cca02g00393 195 SUPERFAMILY Cyclin-like 90 192 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00393 Cca-Chr2 8289527 8294253 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00393 K03124 - fve:101305780 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01937 03 39193655 39197538 Cca02g00393 02 8289527 8294253 PCT