Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02456 ATGTCTCGCACTCCCAACTACGAGTTCCAGGAATGGTGGAACAAGCAGCGCGAGAAGAacaacaacctcgacccccccgacgaccaccaccacctcctccaccaccacaagcacgaccactcccaTTCCGCCCCGACTCCGTCGTTCACGACGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCTCCCGGAACGCGCGGCAGCTCTCATGGGTCTGCCTCCTCAAATTCCAGCAGCTCGCCGCATCCCTCGGCTGGCTCTCCAACGGCCTCTTCCACCTCTTCCGCACCGCCAACCGCCGGATCGCCGATTCTGCGTCATTTCGCGGCGACTCCTCGCGCCTCTACCGCGCGATCCGCGTGTTCCTCGCCGTCGTCATCGTCCTTCTAGGGTTCGAGCTCGTCGCGTATTTCAAAGGCTGGCATTTCAGCCCCCCCGATCCCACCGACGTTTTGGGGATGCTCGGTGTCGTTTATGCCAAGTGGCTCGACGTGCGGGCCGCTTACCTGTCGCCGCCGCTGCAGAGTTTGGCCAACCTGTGCACCGTTCTGTTCATCGTGCAGTCGGTGGACAGGATCATTTTAATCTTGGGCTGTTTCTGGATCAAGTTCCGGAGGCTCAAGCCTTTGGCGAGTGTGGATTATGATAGTGCCAGCGTGGAGGATTTTCCGATGGTGTTGGTTCAGATTCCCATGTGCAATGAGAGGGAGGTATACCAACAATCCATTGGAGCAGTTTGTATCATGGATTGGCCAAAGGAGAAAATGCTTGTGCAGGTTCTTGATGATTCTGATGAAGTAGATATCCAGCAGCTCATCAAGGCAGAAGTGCTTAAATGGCAACAACGAGGTGTTCGGATAATATATAGACACCGCCTTATACGTACAGGCTACAAGGCAGGGAATCTTAAATCAGCAATGGGCTGTGATTATGTTAAGGATTATGAGTTTGTGGCAATATTTGATGCCGATTTTCAGCCAACACCGGATTTCTTAAAGAAGACAGTGCCTTATTTCAAGGGAAAGGATGATTTGGCTTTAGTCCAGGCAAGATGGGCATTTGTAAACAAGGATGAGAACTTGCTTACAAGATTGCAGAACATCAATTTGTCTTTCCACTTTGAGGTGGAACAGCAGGTGAATGGTATCTTCCTTAACTTCTTTGGTTTTAATGGAACTGCTGGTGTCTGGAGAATAAAGGCCCTTGAGGAGAGTGGTGGTTGGTTGGAGCGAACAACTGTTGAAGACATGGATATTGCTGTTCGTGCTCATCTCTGTGGATGGAAGTTTATATTTCTCAATGATGTTAAGTGTCTTTGTGAACTTCCAGAGACCTATGAGGCATATAAGAAACAACAACACCGCTGGCATTCCGGTCCAATGCAATTGTTCCGCTTGTGTTTTCTCGATATACTTCGTTCAAAGGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGAAGCTCATCCTGCCATTTTATTCCTTCACCTTATTCTGCATCATTCTTCCCTTGACCATGTTCCTTCCCGAAGCTGAGCTCCCAGCCTGGGTTGTTTGTTACATTCCTGGAATCATGTCCATCCTAAGTGTTCTCCCAGCTCCACGGTCATTTCCATTTATAGTTCCTTACCTTCTATTTGAGAACACTATGTCAGTAACTAAATTTAATGCCATGATATCTGGACTACTTCGCTTTGGGAGTTCATATGAGTGGGTGGTTACAAAAAAGTTGGGAAGATCATCCGAGACAGATTTGGTGGCCTTTGAGAAAGAAGCTGAACCTCTAATGCGATCTAACAGTCTTCATAGATCATCCTCAGATTCAGGCATTGAGGAACTAAGCAAACTAGAATTGTCAAAGAAAATTGGGAAGACCAAGAGAAATCGTCTCTTCAGGAAAGAACTTTATCTTGCATTTATATTATTGACAGCCTCTGTTAGAAGCTTATTATCTGCCCAAGGAATTCACTTCTACTTCCTATTATTTCAAGGGATAAGCTTTCTGGTTGTTGGTCTTGATTTGATTGGAGAGCAGGTTAGTTGA 2361 0.3901 MSRTPNYEFQEWWNKQREKNNNLDPPDDHHHLLHHHKHDHSHSAPTPSFTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRNARQLSWVCLLKFQQLAASLGWLSNGLFHLFRTANRRIADSASFRGDSSRLYRAIRVFLAVVIVLLGFELVAYFKGWHFSPPDPTDVLGMLGVVYAKWLDVRAAYLSPPLQSLANLCTVLFIVQSVDRIILILGCFWIKFRRLKPLASVDYDSASVEDFPMVLVQIPMCNEREVYQQSIGAVCIMDWPKEKMLVQVLDDSDEVDIQQLIKAEVLKWQQRGVRIIYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTVPYFKGKDDLALVQARWAFVNKDENLLTRLQNINLSFHFEVEQQVNGIFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPETYEAYKKQQHRWHSGPMQLFRLCFLDILRSKVSWVKKVNLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAELPAWVVCYIPGIMSILSVLPAPRSFPFIVPYLLFENTMSVTKFNAMISGLLRFGSSYEWVVTKKLGRSSETDLVAFEKEAEPLMRSNSLHRSSSDSGIEELSKLELSKKIGKTKRNRLFRKELYLAFILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02456 786 PANTHER - 157 785 - -
Cca01g02456 786 Coils Coil 52 52 - -
Cca01g02456 786 Pfam Glycosyl transferase family group 2 418 615 IPR001173 -
Cca01g02456 786 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 316 541 IPR029044 -
Cca01g02456 786 SUPERFAMILY Nucleotide-diphospho-sugar transferases 326 602 IPR029044 -
Cca01g02456 786 Coils Coil 162 162 - -
Cca01g02456 786 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 157 785 - -
Cca01g02456 786 MobiDBLite consensus disorder prediction 18 53 - -
Cca01g02456 786 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02456 Cca-Chr1 53758275 53767564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02456 162 786 Miscellaneous Gene Families AT3G07330 76.899 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02456 - - gmx:100801779 1166.37