Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02447 ATGGTATTCCATCGCAACAGCGTATTCTCCGAAATACGAAGGCTGTTAAAGGAGAAAAAAAGGAAGGAAATAGATGCAATGGGCATGGCAGCGATATTTGTATCTGTGTTGTTACTCTCATTCTCCATATCCAGTGGTGAAATCTCAGGGCAAGTGGGAGTGAACTATGGGCAATTAGGGAACAACCTTCCGGCACCGAAAATGTCAGTGAGTCTGATAAAGTCGTTGAAGGCGAAGCGAGTGAAAATATACGACGCAAACGCGGAAATCCTGGAAGCGCTTAAGAACACGGGCATTCAAGTATCGATCATGCTCCCAAACCAACTCGTGCGCAACGTCTCCACCAACCAGACACTCGCGGATCGGTGGGTAGAGTCCAACGTCCTACCCTTCTACCCTCAAACGCTCATCCGCTACCTCCTCGTCGGCAACGAACTCATCACCTCCACAGGAAACGAAACATGGCCCCACATCGTTCCAGCAATGCACAGAATGAAGCAGTCCCTCACAACCTTCCGTTTGAACAAGGTGAAGGTGGGAACTCCCCTGGCCATGGACGTGTTGTCGTCGTCGTTTCCCCCCTCAAACGGGACTTTCAGAAACGACATCGCGTATAGCGTCATAAAGCCCATGCTCCACTTCCTCCACAAAACCCGCTCCTTTTTCTTCCTAGACGTCTACCCGTTTTTCGCCTGGTCTTCGGACCAAACCCACATTAATCTCACTTACGCCCTCTTCCACTCCAAAACCATCACGGTAACGGACCCCTTCACGGCCTTAAACTACACCAACCTATTCGACCAGATGCTTGACGCCGTTTATTTCGCCATGAAGCGGCTCGGCTACTCCAAAATTCGGATCTTCATCGCGGAAACGGGTTGGCCCAATGGGGGAGACTTGGACCAACTTGGCGCCAATGTTCACAACGCTGCCACGTATAACCGGAACCTAGTTAAGAGACTTACCAGAAAACCGGTTTTCGGAACACCGGCTCGACCGGGTTTGCTTCTCCCGGCTTTTATATTTTCACTTTTTAATGAGAACCTGAAATCGGGTTTTGGTACGGAGCGACACTTCGGGTTGTTGTACCCCAACGGCTCGAGGGTTTATGACATCGATCTCTCTGGTGAGACGCCGGACTCCGAACTTGCGCCGATTCCAGCGGCGGTGGATTATAAGGGGAAGGCTTGGTGTGTGGTGGCTGAAGGGGCGGATGTGACGGCGGTTGCGGCGGCGTTGTCGTACGCGTGCTCGCAGGGGAACGGAACCTGTGACCCGATCCAACCTGGAAAAGCGTGTTTTAAACCCGATTCATTGGTGGGTCACGCTAGCTATGCGTTCAGTGCATATTGGGCTCAATTTAGACGCCTGGGTGGAACTTGCTATTTCAATGGGCTTGCGGCCCAAACTGCAAAGGATCCAAGTTATGGGTCTTGCAAGTTTCCAAGTGTGACTCTTTGA 1461 0.5147 MVFHRNSVFSEIRRLLKEKKRKEIDAMGMAAIFVSVLLLSFSISSGEISGQVGVNYGQLGNNLPAPKMSVSLIKSLKAKRVKIYDANAEILEALKNTGIQVSIMLPNQLVRNVSTNQTLADRWVESNVLPFYPQTLIRYLLVGNELITSTGNETWPHIVPAMHRMKQSLTTFRLNKVKVGTPLAMDVLSSSFPPSNGTFRNDIAYSVIKPMLHFLHKTRSFFFLDVYPFFAWSSDQTHINLTYALFHSKTITVTDPFTALNYTNLFDQMLDAVYFAMKRLGYSKIRIFIAETGWPNGGDLDQLGANVHNAATYNRNLVKRLTRKPVFGTPARPGLLLPAFIFSLFNENLKSGFGTERHFGLLYPNGSRVYDIDLSGETPDSELAPIPAAVDYKGKAWCVVAEGADVTAVAAALSYACSQGNGTCDPIQPGKACFKPDSLVGHASYAFSAYWAQFRRLGGTCYFNGLAAQTAKDPSYGSCKFPSVTL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02447 486 Gene3D Glycosidases 50 380 - -
Cca01g02447 486 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 35 478 IPR044965 GO:0004553|GO:0005975
Cca01g02447 486 Gene3D - 392 483 - -
Cca01g02447 486 Pfam X8 domain 397 467 IPR012946 -
Cca01g02447 486 Pfam Glycosyl hydrolases family 17 52 373 IPR000490 GO:0004553|GO:0005975
Cca01g02447 486 PANTHER BNAC03G35190D PROTEIN 35 478 - -
Cca01g02447 486 SMART X8_cls 396 481 IPR012946 -
Cca01g02447 486 SUPERFAMILY (Trans)glycosidases 52 373 IPR017853 -
Cca01g02447 486 ProSitePatterns Glycosyl hydrolases family 17 signature. 285 298 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02447 Cca-Chr1 53661141 53664772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02447 47 486 Glycoside Hydrolase AT4G14080 51.919 9.20e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02447 - - ccaj:109805358 946.806