Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02440 ATGGGGCATTTGGGTCAGAAAAGTTTGAATTATGTGCTTGAAAATGGAGTGAGTGTGTGTTGTGATGAAGAGTGTTTTGAGAAAGACACCATTCCGGCGTCCATTCAGTGTGCTGTCCAAGTCCTGCTCATGGGTCTTGGTGAAGATATCAATAGGGAAGGCATTATAAAGACACCACATCGTGTTGCCAAGGCCCTTCATGAAGGAACTATAGGTTATGGGCTAAGTGCGAAGGAAATTGTGGAAGGTGCATTGTTCCCTGAAGCAGGGGTAGAGGGTACGAAAGTTGGTCATGCAGGTGGAGTGGGTGGACTTGTGATGGTGCGAGACCTTGATTTTTATTCGTATTGTGAGTCTTGTATGTTACCCTTTTACTTAAAGTGTCACGTGGGTTACGTCCCAAGTGGCCAAAGGGTTTTGGGCTTAAGCAAGCTCTCTCGTGTCACCAATGTCTTCGCAAAGCGTCTCCAAGAGCCTCAGCGTCTCGCAGATGAGGTGTGTTCTGCTCTGCACCAAGGGGTTCAACCCCAAGGTGTTGCTATTGTGCTTCACTGCACACACATCAACTTTCCTCACTCCAACCACAAGGGCTTGGTGGAGACTCTTGTTTCTTCTGGCTCTGGCGTTTTTCAAAACAAAGATGCTGACATGTGGGCTGATTTTTTTGGCCTTCTCAAGTTTAGGGGTGTTGACAAGGAGAAGCTTCATGCTAAGGGCACGTCGTCTTGGTGCCCTTCTTTGTCATATAAGGATTCGTCCAAGGTTGAAGAAGTGAACCCTCTCATGATCACTGCAGTGTCTTCAATTCTCAAGTCTCTAGGTGAGGATCCTTCAAGGAAGGAGCTGGTGGGGACTCCTGGGAGATTTGTGAAGTGGCTGATGAACTTCCAATGTGGTGACATTGATATGAAGAAGCTGAATGGTGATTTGGTTGTCAACAGTGCTGAGGTGAGCCTTGGTGAGAAAGAGAAAGAAATTTACTTGGAGATGAACTTGCCCTTTTGGTCACAGTGTGAGCATCATTTGCTTCCGTTCCATGGTGTTGTTCACGTAGGGTACTTTGTTTCAAAAGGGGTTGAGTTTCAGCCCATTGGGAAATCCCTTCTGCAGTCAATAGTGCATTTTTTTGGGTTTAAGCTTCAGGTTCAGGAGAGGCTCACGAAGCAGATTGCTGAAACTGTTTCTCCACTGGTGGGTGGGAATGTGATCGTCGTGGTGGAAGCTGGCCACACATGCATGATTTCTAGGGGAATTGAGAAGTTTGGAAGCAACACTGCTACCATTGCTGCGTTGGGACTCTTTGCAACTGATCTTGCTGCTAGGACCTCGTTCCTCCAGAGTATTCCAAGGGCTACCTACATCTCTTGA 1368 0.4708 MGHLGQKSLNYVLENGVSVCCDEECFEKDTIPASIQCAVQVLLMGLGEDINREGIIKTPHRVAKALHEGTIGYGLSAKEIVEGALFPEAGVEGTKVGHAGGVGGLVMVRDLDFYSYCESCMLPFYLKCHVGYVPSGQRVLGLSKLSRVTNVFAKRLQEPQRLADEVCSALHQGVQPQGVAIVLHCTHINFPHSNHKGLVETLVSSGSGVFQNKDADMWADFFGLLKFRGVDKEKLHAKGTSSWCPSLSYKDSSKVEEVNPLMITAVSSILKSLGEDPSRKELVGTPGRFVKWLMNFQCGDIDMKKLNGDLVVNSAEVSLGEKEKEIYLEMNLPFWSQCEHHLLPFHGVVHVGYFVSKGVEFQPIGKSLLQSIVHFFGFKLQVQERLTKQIAETVSPLVGGNVIVVVEAGHTCMISRGIEKFGSNTATIAALGLFATDLAARTSFLQSIPRATYIS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02440 455 PANTHER GTP CYCLOHYDROLASE I 1 452 IPR001474 GO:0003934|GO:0046654
Cca01g02440 455 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 258 449 - -
Cca01g02440 455 Pfam GTP cyclohydrolase I 264 448 IPR020602 -
Cca01g02440 455 Pfam GTP cyclohydrolase I 36 213 IPR020602 -
Cca01g02440 455 Gene3D - 33 81 IPR043134 -
Cca01g02440 455 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 19 226 - -
Cca01g02440 455 Gene3D - 250 303 IPR043134 -
Cca01g02440 455 PANTHER GTP CYCLOHYDROLASE I 1 1 452 - -
Cca01g02440 455 Gene3D - 315 450 IPR043133 -
Cca01g02440 455 Gene3D - 99 228 IPR043133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02440 Cca-Chr1 53517711 53521843 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02440 K01495 - gmx:100792675 679.093