Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02434 ATGGGTGCAAAGAGGGGCAATTCCCCAGTGAATGTTTTCTTGGAAAGGTTGACGAAGCTGCCAATAAAAGTGAAGATCTTTTTGGGGGCATTGCTTGGTGTTTGTGCTTTGGTGGCCTTAAAGTTAACCATCATGAATCATAATTGTTTCTTCATAGTCTCTGAAGCAATCCATGCTGCTGGAATAATTGCCCTCATATACAAGCTTTTCGCCCTTAAGACATGCTCTGGTTTATCGCTTATAACCCAAGAGCTCACAGCTTTATTCCTAGCAGCAAGATTAAGTTGTAGCACCTTTATAGAGGCTAACGTTCACACCGTGCTAGATCTTATATCTCTTATGTCAACATTATTGGTTATATGGATGATGAGATTCAAGTTAAAGTCATCCTATATCAAGGACCTTGACAACCTGCGACTATACTTTGTGGTGGTTCCTGTTGCAATCCTTGCGATACTAATCCACCCTTTTATATTTTCTTGGAGTTTATTTCTTCGAATTATTTGGGCATTCAGCTTGTATTTGGAAGCTGTTTCTATTCTACCCCAACTTCGTTTTATGCAGAACGCAAAGATGATTGAAACATTTACAGGGTATTATGTATTCGCCCTCGGTATTTCAAGATTCATGGGACTGGCTTATTGGATAATTCAGATGTATGAGACTGGAGGGGGACGATTCTATTGGGGTGGGGGTAACTATTTCTGGTTCTTGGCATCTTTCATTGCTGAAATGGTTCAATCCTTCATCTTGGCTGACTTTTGTTATTATTACATGAAGAGCTTCATGCAAGGACAACTTTTGAGGAAAATGCCTGTTTAA 822 0.3966 MGAKRGNSPVNVFLERLTKLPIKVKIFLGALLGVCALVALKLTIMNHNCFFIVSEAIHAAGIIALIYKLFALKTCSGLSLITQELTALFLAARLSCSTFIEANVHTVLDLISLMSTLLVIWMMRFKLKSSYIKDLDNLRLYFVVVPVAILAILIHPFIFSWSLFLRIIWAFSLYLEAVSILPQLRFMQNAKMIETFTGYYVFALGISRFMGLAYWIIQMYETGGGRFYWGGGNYFWFLASFIAEMVQSFILADFCYYYMKSFMQGQLLRKMPV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02434 273 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 4 272 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PRINTS ER lumen protein retaining receptor signature 50 69 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PRINTS ER lumen protein retaining receptor signature 77 97 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PRINTS ER lumen protein retaining receptor signature 169 189 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PRINTS ER lumen protein retaining receptor signature 191 205 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PRINTS ER lumen protein retaining receptor signature 205 223 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 Pfam ER lumen protein retaining receptor 74 218 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca01g02434 273 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 4 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02434 Cca-Chr1 53441520 53447655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02434 1 273 Miscellaneous Gene Families AT3G25160 58.974 1.11e-109 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02434 - K10949 gmx:100790733 416.001