Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02346 ATGAAAATTTTCAATATTCTCAGTCCTGAAGACAAGGGAATGACAAAACAGAATGCTAACATAAAGTTAAAAAGATGGAGAAGTGTTTACTATTTTATCTTTATACCGGGTGCTCTTGCTCTTCTCCTCTCTGTTGCTGCCATGTCCAAGTTCATCTCCCTCAAATCATTTCTTGGTACTGAATCTTTATACTCCAATCTGAATCCTGAGGTCCCAAATGGCAATCAACAAGAAGTGATGATGATGACTGTGCAAATTGTGATTCAGAAAATTGAAGAGCAACTTGACAAACTGAGGGAAACAAAAGAGGATCCATCATCATCATCCCCATCTGTATTCCAACAAAGTGCATTTCTTGCTGATATATTAGGACTTCTTGAGTCAGCGGTAGCATCTCATGATTCTCAGCAAAATGCTAGTTTCACCACCATTCATCCTCTAGTGAGGAAAAAGAAACAATCTGATGAACCTGCTGATTACTTTCTGCGAGAAGAGATTCGCAAGTACGTCAGGATCAAGCCTAACAGATTAGGAAAACAAAACTTCATGGGGGCAAATGCAAGCTTCACCAGCATAGGACACGCTTGCTTTTCAATGAAGGAAGAGCTAGAAGAATACATGGACTACGATGTTGGTGACATCTGCAATGATGACTGGAAGATAGCTCAAAAGCTCATGGTTCATGGCTGTGATCCTCTACCAAGGAGAAGGTGCTTCTCAAGAGCCCCTAAGTTGTACAACCAACCATTTCCCATCAATGAATCCTTGTGGAAACTCCCTGATGATAGGAATGTCAGATGGAGCCAATACCAGTGCAAGAGCTTTGCTTGTCTCGCCGGCAACGCCACCCGTAAGGGGTTCTTCAAGTGTGCATACTGCTTCAACCTCACCAACCATGAGATGCCAAGATGGGTAAGCCTAGAGGCTGATTCAAACCAGACTTCTGATTTCCTTATATCTGAGGTTCTTGGAGTTAAGCCAGAAGAGATCAGAATAGGATTGGACTTCAGTGTTGGAACTGGAACTTTTGCTGCTAGGATGAGGGAATTCAATGTGACAATAGTTTCAGCCACTATCAATTTTGGGGCACCCTTTAGTGAAATGATAGCTCTTAGAGGACTTGTTCCTCTATACTTGACTATAAACCAAAGGCTTCCATTTTTTGACAACACCCTGGATTTGATTCACACAACAAGGTTTCTGGATGGGTGGATTGACTTTGTGCTCCTTGAGTTTATATTGTATGATTGGGATAGAGTTTTGAGGCCAGGGGGGTTGCTTTGGATTGACAGCTTTTTCTGCTTGAAGGAAGATTTGTATGATTACTTGCAGGCCTTCAAAATGCTGAGATATAAGCAGCACAAATGGGTGGTTGTTCCAAAGCTTGATAAGGATGATCAGGAAATGTTCTTTTCTGCTGTTTTAGAGAAGCCTCCTAGGCCATTCAGAAAACGGAGTCACATCCAACGGCGTGAGAAAACCTCAACAGCATCAAATCAAATCTCAAACGGCGTCATCTCCGCTTCACTCTCTCTCGTACTCGTGCCAGATTCAAATGTCTCCCGAGCCTGA 1572 0.4249 MKIFNILSPEDKGMTKQNANIKLKRWRSVYYFIFIPGALALLLSVAAMSKFISLKSFLGTESLYSNLNPEVPNGNQQEVMMMTVQIVIQKIEEQLDKLRETKEDPSSSSPSVFQQSAFLADILGLLESAVASHDSQQNASFTTIHPLVRKKKQSDEPADYFLREEIRKYVRIKPNRLGKQNFMGANASFTSIGHACFSMKEELEEYMDYDVGDICNDDWKIAQKLMVHGCDPLPRRRCFSRAPKLYNQPFPINESLWKLPDDRNVRWSQYQCKSFACLAGNATRKGFFKCAYCFNLTNHEMPRWVSLEADSNQTSDFLISEVLGVKPEEIRIGLDFSVGTGTFAARMREFNVTIVSATINFGAPFSEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDFVLLEFILYDWDRVLRPGGLLWIDSFFCLKEDLYDYLQAFKMLRYKQHKWVVVPKLDKDDQEMFFSAVLEKPPRPFRKRSHIQRREKTSTASNQISNGVISASLSLVLVPDSNVSRA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02346 523 Coils Coil 81 104 - -
Cca01g02346 523 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 307 478 IPR029063 -
Cca01g02346 523 Gene3D Vaccinia Virus protein VP39 303 461 IPR029063 -
Cca01g02346 523 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 323 432 IPR004159 GO:0008168
Cca01g02346 523 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 19 482 - -
Cca01g02346 523 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 19 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02346 Cca-Chr1 52050855 52056292 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02346 - - gmx:100809058 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02346 01 52050855 52056292 Cca01g02346 01 52050855 52056292 ECH