Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02345 ATGGTAGAGAGGGAGCAAGCAAGGCCTCTAGCCCCACCAATAGAACGCCCAAGCAGCGACGAAGATGACACCACACAACACCACCAAACAAAACGTCACAGAAAATTCATCAAACGATGTGCTTGCCCACTAATTTCTCTACTTCTCCTAGCAATAGTAATCATAGTTTTGATCTTCACAATATTCCGCGTCAAGGACCCCATTATCACAATGAACGGTGTCCAAATCACAAACCTTGAACTCGTCAACAATAGCACAATACCACAAATCGGGGTGAACATTTCCTTGATCGCGGACGTGTCGGTGAAGAACCCAAACGTGGCATCATTCAGGTATAGTAACACCACCACAAGTTTGTACTACCACGGTGCCATCGTGGGTGAGGCTAGAGGACCCCCAGGGAGGGCCAAGCCTAGAAGAACAATAAGGATGAACGTTACAGTTGATGTTATCACGGATCGTGTGGTTTCAAGTCCAAATTTTGTGACGGATTTGGGTTCTGGGTTGTTGACTGTGGTGAGCTTCTCCAGAGTTCCGGGGCGGGTGAAGATCTTGAACGTGATCAAGAGACATGTTGTTGTCGACATGAACTGCACCACCACTTTCAATATTTCTTCGCGGGGAATTGAAGACCAGACTTGTAAGCGCAAGGTCAAACTTTAG 663 0.4691 MVEREQARPLAPPIERPSSDEDDTTQHHQTKRHRKFIKRCACPLISLLLLAIVIIVLIFTIFRVKDPIITMNGVQITNLELVNNSTIPQIGVNISLIADVSVKNPNVASFRYSNTTTSLYYHGAIVGEARGPPGRAKPRRTIRMNVTVDVITDRVVSSPNFVTDLGSGLLTVVSFSRVPGRVKILNVIKRHVVVDMNCTTTFNISSRGIEDQTCKRKVKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02345 220 SUPERFAMILY LEA14-like 48 157 - -
Cca01g02345 220 Pfam Late embryogenesis abundant protein 100 199 IPR004864 -
Cca01g02345 220 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 20 219 - -
Cca01g02345 220 MobiDBLite consensus disorder prediction 15 29 - -
Cca01g02345 220 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g02345 220 Gene3D - 52 205 - -
Cca01g02345 220 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 20 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02345 Cca-Chr1 52039124 52040110 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02345 - - gmx:100799820 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02345 01 52039124 52040110 Cca01g02345 01 52039124 52040110 ECH