Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02341 ATGGCGTGTTTGTTGAGAGCGAGAAACCTTTCATTTTCGGTGGCGAGGCGCGTTCGGTGCATGAGCAACGTACCCGAGAACAGCGTGTATTCGGGGCCCAAATCGCAGAACCCGAACCAGCGAGTGACGCTCAGCCACTTGAGGCAGAAGCACCGGGCCTCCCAGCCCATCACCATGGTCACCGCCTACGACTACCCCGCCGCCGTGCACCTCGACACTGCTGCCATCGACATCTGCCTCGTCGGCGACTCCGCCGCCATGGTGGTTCACGGCCATGACACCACTCTCCCCATCACGCTCGACGAGATGCTCGTCCACTGCCGCGCCGTCGCGCGTGGAGCCAAAACGCCCCTTCTCATCGGGGACTTGCCTTTTGGCACCTACGAATCCGGTTCCAATCAGCAGGCGGTGGATACAGCAGTTCGAATTTTGAAAGAAGGGGGAATGGATGCCATAAAATTGGAAGGAGGGTCTCCTTCGAGAATTTTTGCAGCAAAGGCTATTGTTGAAGCTGGAATAGCTGTAATGGGCCATGTAGGCCTTACTCCCCAGGCCATTAGTGTTTTGGGGGGGTTTAGACCTCAAGGAAAGAATGTTGCTAGCGCTGTCAAGGTTGTAGAGACCGCATTGGCTTTGCAAGAAGCAGGGTGCTTTGCTGTTGTTCTGGAATGTGTGCCTGCACCTGTTGCCGCCGCAGCAACAGCAGCCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAGGTTCTGGTTTACCATGATCTGCTTGGTATGCTTCAACACCCCCACCATGCAAAGGTATTTGTAGCATACCTTAACCTTGTTCTTCTTTCAAACATCATAGGATTCATTGCTAATTTTGAGGTGACGTATCTTTTTCAGGTTACTCCAAAATTTTGTAAGCAGTATGCGCATGTAGGAAATGTGATCAATAAAGCCTTACTGGAGTATAAGGAAGATGTGGCGAATGGTTCGTTTCCTGATGCTCTCCATAGTCCATACAAAATCAGCAGAACAGATGCAGATGTTTTTTCAAATGAGTTGCAAAGATTAGGTTTGGACAAGGCAGCATCTGCAGCATCTGAAGCAGTTCAGAAGATGGTTACAACCAAATAA 1131 0.5075 MACLLRARNLSFSVARRVRCMSNVPENSVYSGPKSQNPNQRVTLSHLRQKHRASQPITMVTAYDYPAAVHLDTAAIDICLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGAKTPLLIGDLPFGTYESGSNQQAVDTAVRILKEGGMDAIKLEGGSPSRIFAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVASAVKVVETALALQEAGCFAVVLECVPAPVAAAATAALQIPTIGIGAGPFCSGQVLVYHDLLGMLQHPHHAKVFVAYLNLVLLSNIIGFIANFEVTYLFQVTPKFCKQYAHVGNVINKALLEYKEDVANGSFPDALHSPYKISRTDADVFSNELQRLGLDKAASAASEAVQKMVTTK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02341 376 Pfam Ketopantoate hydroxymethyltransferase 41 275 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 41 336 IPR015813 GO:0003824
Cca01g02341 376 CDD KPHMT-like 44 332 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 Hamap 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 42 338 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 Gene3D - 39 349 IPR040442 -
Cca01g02341 376 TIGRFAM panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 41 277 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 PANTHER 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE 4 274 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 PANTHER 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE 298 373 IPR003700 GO:0003864|GO:0015940
Cca01g02341 376 PANTHER 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE 4 274 - -
Cca01g02341 376 PANTHER 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE 298 373 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02341 K00606 - gmx:100808841 575.474