Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02299 atgctttcttcttcactcttcactttccactcAAACACAAAGGTAGCCATGGAAACACCAACACCCCGGGCTTTGAAAATATACTTCCTCCCATTCTTCGCACAGGGGCACCTAATCCCACTAGTCCAGCTTGCACGCTTGGTGGCGTCACGTGCCCAGCACGTCACCATCATCACCACCCCCTCCAACGCCCAACTCTTCCACAAAACCCTCAAcgacgccgccgccgccgcccaccgcgtccgcGTTCTCCTGATCGACTTCCCAGCCTCCCAGGTTGGCCTCCCCACCGGCGTGGAGAATCTCGTGGCCGCCTCCGACAACGACACCGCCTACAAGATAAGTATGGCGGCGCACCTCATCAAACCCCAAGTGGAGTCCCTCATGAAGCAATCCCCTCCCGATGTGTTCATCCCCGACATCATGTTCACCTGGTCCAAACACTCCTCCACCGCTCTCAACATCCCCAGACTCGTCTTCAGCCCCATTTCAATCTTCGGCGTCTGCATGTTCCACGCCATCAAGGAAAACCCTCAAGCCTTTCATTCTCACTCTCGACCCTATCACATCCCGGCTCTACCACACGCTCTTACCTTGCCCATAAAACCCTCACCTGGTTTCCTTGCTATCACTCAATCTTTGTTGGACGGTGAAGAAGGAAGCCATGGGGTCATCGTAAACAGCTTTGCGGAACTCGACGTGGAGTATACCAAACACTACGAGAATCTCACTGGGAGAAAAGTGTGGCATATTGGACCTAGTTCCCTCATGGTGCAGAAAACAGTGCCTAGTGTTAAAGGAGATGAACACGAATGCCTGACATGGCTCAACTCAAAGGAAAATGATTCGGTCGTTTACATTTGTTTCGGGAGTTTGTCTCTTATTTCGGATAAGCAGCTTTATGAAATAGCCATTGGACTTGAAGCGTCAGGGCATCAGTTTCTCTGGGTGGTTCATCGGAAAAACAAAGACAAAGGCAACGAAGAAGAAGAAACATGGTTGCCGGAAGGGTTTAAGGAGAGGATGAGGGAGAAAAAGAGAGGGATGCTGATAAAGGGGTGGGCCCCACAGCCGTTGATTTTGAACCACGGTGCTGTTGGAGGGTTTGTGACGCACTGTGGGTGGAACTCGGTGGCCGAGGCTATCAGTGCTGGGGTTCCGATGATAACCATGCCGGGGTTTGGTGACCACTACTATACTGAGAAGCTGATAACGGAGGTGCATGGATTTGGGGTGGAGGTGGGCGCAGCGGAGTGGACCCTGTCGCCGTACGAGGGTAAGAAGAGTGTGGTGAGTGGGGAGAGGATAGAGAAGGCTGTGAGGAGGCTGATGGATGGTGGAGAAGGTGAGGGGATTAGGAAGAAAGCGAAGGAGATGAAGTACAAAGCTTGGAAAGCTGTTAATGAAGGTGGATCCTCTCACAACAGTCTCTTGGATTTGGTACAACATCTTAAGAGCTTTGTGCCTAACCTAGAAAAGGTAGCTAATAACTAG 1494 0.4913 MLSSSLFTFHSNTKVAMETPTPRALKIYFLPFFAQGHLIPLVQLARLVASRAQHVTIITTPSNAQLFHKTLNDAAAAAHRVRVLLIDFPASQVGLPTGVENLVAASDNDTAYKISMAAHLIKPQVESLMKQSPPDVFIPDIMFTWSKHSSTALNIPRLVFSPISIFGVCMFHAIKENPQAFHSHSRPYHIPALPHALTLPIKPSPGFLAITQSLLDGEEGSHGVIVNSFAELDVEYTKHYENLTGRKVWHIGPSSLMVQKTVPSVKGDEHECLTWLNSKENDSVVYICFGSLSLISDKQLYEIAIGLEASGHQFLWVVHRKNKDKGNEEEETWLPEGFKERMREKKRGMLIKGWAPQPLILNHGAVGGFVTHCGWNSVAEAISAGVPMITMPGFGDHYYTEKLITEVHGFGVEVGAAEWTLSPYEGKKSVVSGERIEKAVRRLMDGGEGEGIRKKAKEMKYKAWKAVNEGGSSHNSLLDLVQHLKSFVPNLEKVANN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02299 497 CDD GT1_Gtf-like 25 460 IPR002213 GO:0008194
Cca01g02299 497 PANTHER GLYCOSYLTRANSFERASE 20 489 - -
Cca01g02299 497 Gene3D Glycogen Phosphorylase B; 27 473 - -
Cca01g02299 497 PANTHER GLYCOSYLTRANSFERASE 20 489 - -
Cca01g02299 497 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 270 406 IPR002213 GO:0008194
Cca01g02299 497 ProSitePatterns UDP-glycosyltransferases signature. 354 397 IPR035595 -
Cca01g02299 497 Gene3D Glycogen Phosphorylase B; 270 468 - -
Cca01g02299 497 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 26 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02299 Cca-Chr1 51477398 51479633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02299 27 484 Glycosyltransferase AT2G15490 39.375 1.12e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02299 - K23260 gmx:100793313 693.73