Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02287 ATGGAGGCCATGACAGTTAAGAAAAAACCAGAAGTGGAGGATAGAATTAGCGAGCTATCAGATGATGTTCTATGTCACATTCTTTCCTTCCTTCCAACCAAGGAAGCCATTGCCACCTCTTTGTTGTCCACAAGATGGAGATTTGTGTGGACCATGGTTCCATCTCTTCACATTGAGTGCCCCTTACCAATCATGAATCACTACAAGACACTCAATGCGTTCTTGGCTCTACGCAGAACACAAAAAAGGCAGCTCCTTTTCCCTCCAACCCCTTACTCATTTTTCAGTCGATGCTCCCACTCATGGAGCACCCTCAGAGCTTCTGTGCCAGTCCCTCATGAAACCCATTTCAGGGACCCTTACACTATTCATTTGTTTTGTGCCAATGCTCTCAAAGTCTCTGCCAAAAGGGCCCTTCTCCCTGAAGGGAAACAGCTACATGCCCATTTGATAAAGTTTGGATTTTCCCACATTCTGTCCCTACAAAATCAGATTTTGACCTTTTATCTTAAATGTAAGGAAACTGAAGATGCAGAGAAGCTGTTCGAGGGATTGCCTGTGAGAAATGTGGTGTCGTGGAACATTTTGATTCGCGGTATTGTTGGATGTGGCAATGCATATGAAAATGACTCGAATCCACAGCTTTGTTTTTCTTATTTTAAAAGGATGCTGTTGGAAATGGTGGTTCCGGATGGTACAACTTTTAATGGTCTCATTGGTGTTTGCGTTAAGTTTCATGATATTGACGTGGGTTACCAGCTGCATTGTTTTGTAGTGAAACTAGGACTTGATTTAGATTGTTTTGTGGGAAGTGTTCTTGTTGATTTGTATGCAAAATGTGGTTTAGTTGAGAAAGCAAGGAGGGTTTTTCATGTTGTTGTGCAAAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGTTATGCCTTGAATTGTTTACCAGAAGAGGCTGTTGGCATGTTCAACTTGATGAGATCGGATGGTGCAAATGGGGATGAGTTCACTTTTAGCAGCCTGCTAAGTATATGTGATACTTTGGAATATTATGATATTGGAAAGCAGGTTCACAGTCATATTCTAAAACAGTCATTTGATTCAGATGTGTTAGTAGCTAGTGCATTGATCAACATGTATGCGAAAAATGAAAATATAATTGACGCGCGCAAACTATTTGATAGGATGGTGATTCGAAATGTTGTGACATGGAACACAATTATTGTTGGGTGTGGAAATTGTGAAGGGAATGATGTTATGAAGCTTTTCATAGAGATGCTTCGCGAAGGGTTTTCCCCTGATGAACTGACTATTTCCAGCACTTTAAGTTCATGTGGCTATGCATCTGCCTTCACCGAAACAATGCAAGTTCATGCTTTTGCTGTTAAATCATCATTTCAAGAATTTTTATCCGTTGCCAATTCTCTGATAAGTGCGTACTCCAAGTGTGGTAGTATTGCTAGTGCATGTAAATGCTTTAGATTAACTGCAGAACCCGATCTTGTTACATGGACTTCATTGATAAACGCATATGCATTCCATGGTCTTGCCAAAGAAGCAATTGAAATGTTTGAGAAGATGCTATCTTGTGGAGTAACACCGGATCCAATTTCTTTTCTTGGTGTTCTCTCTGCTTGTTCTCATTGTGGCCTTGTGGCTAAGGGACTTCACTACTTTAACCTGATGATCAGTGTGTATCAGATTGTTCCTGATTCAGGTCACTATACTTGCCTTGTTGACCTTCTTGGACGATATGGTCTTGTAAATGAGGCTTTTGAATTGTTGAGGTCAATGCCAATGGAAGCTGAATCAAATGTGTTGGGAGCATTTATTGGATCTTGCAATCTGCATGCAAATATTGGACTGGCTAAATGGGCTGCAGAGAAGCTCTTCATCATAGAGCCAGAGAAGAATGTTAACTATGCAGTCATGTCTAACATTTATGCTTCTCATAGACATTGGTATGATGTGGAAATAGTTCGAAGATTGATGGGGAACAAGTGTGATGCGAGAGTCCCTGGTTGCAGCTGGATAGAGATTGGTAATCAAGTTCATTTGTTTGTATCCAATGATAAGACTCACCCTAATGCTGTAGAAATGTATGCTACGCTGAAAATGCTGCTTTGGCCAATGAAGGAAAAATATGGTATGAATTTATAA 2154 0.4034 MEAMTVKKKPEVEDRISELSDDVLCHILSFLPTKEAIATSLLSTRWRFVWTMVPSLHIECPLPIMNHYKTLNAFLALRRTQKRQLLFPPTPYSFFSRCSHSWSTLRASVPVPHETHFRDPYTIHLFCANALKVSAKRALLPEGKQLHAHLIKFGFSHILSLQNQILTFYLKCKETEDAEKLFEGLPVRNVVSWNILIRGIVGCGNAYENDSNPQLCFSYFKRMLLEMVVPDGTTFNGLIGVCVKFHDIDVGYQLHCFVVKLGLDLDCFVGSVLVDLYAKCGLVEKARRVFHVVVQRDLVMWNVMISCYALNCLPEEAVGMFNLMRSDGANGDEFTFSSLLSICDTLEYYDIGKQVHSHILKQSFDSDVLVASALINMYAKNENIIDARKLFDRMVIRNVVTWNTIIVGCGNCEGNDVMKLFIEMLREGFSPDELTISSTLSSCGYASAFTETMQVHAFAVKSSFQEFLSVANSLISAYSKCGSIASACKCFRLTAEPDLVTWTSLINAYAFHGLAKEAIEMFEKMLSCGVTPDPISFLGVLSACSHCGLVAKGLHYFNLMISVYQIVPDSGHYTCLVDLLGRYGLVNEAFELLRSMPMEAESNVLGAFIGSCNLHANIGLAKWAAEKLFIIEPEKNVNYAVMSNIYASHRHWYDVEIVRRLMGNKCDARVPGCSWIEIGNQVHLFVSNDKTHPNAVEMYATLKMLLWPMKEKYGMNL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02287 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Cca01g02287 717 SUPERFAMILY F-box domain 14 57 IPR036047 GO:0005515
Cca01g02287 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cca01g02287 717 Pfam F-box domain 16 51 IPR001810 GO:0005515
Cca01g02287 717 Gene3D Tetratricopeptide repeat domain 251 346 IPR011990 GO:0005515
Cca01g02287 717 Gene3D Tetratricopeptide repeat domain 347 457 IPR011990 GO:0005515
Cca01g02287 717 PANTHER OS07G0578800 PROTEIN-RELATED 108 697 IPR045215 GO:0003723|GO:0009451
Cca01g02287 717 SMART fbox_2 19 59 IPR001810 GO:0005515
Cca01g02287 717 Pfam E motif 615 677 IPR046848 -
Cca01g02287 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Cca01g02287 717 Pfam PPR repeat family 297 341 IPR002885 -
Cca01g02287 717 Pfam PPR repeat family 497 545 IPR002885 -
Cca01g02287 717 Pfam PPR repeat family 397 443 IPR002885 -
Cca01g02287 717 Pfam PPR repeat 272 293 IPR002885 -
Cca01g02287 717 Pfam PPR repeat 572 597 IPR002885 -
Cca01g02287 717 Pfam PPR repeat 472 492 IPR002885 -
Cca01g02287 717 Gene3D - 13 57 - -
Cca01g02287 717 PANTHER OS07G0259400 PROTEIN 108 697 - -
Cca01g02287 717 Gene3D Tetratricopeptide repeat domain 469 699 IPR011990 GO:0005515
Cca01g02287 717 Gene3D Tetratricopeptide repeat domain 118 250 IPR011990 GO:0005515
Cca01g02287 717 TIGRFAM PPR: pentatricopeptide repeat domain 372 399 IPR002885 -
Cca01g02287 717 TIGRFAM PPR: pentatricopeptide repeat domain 299 328 IPR002885 -
Cca01g02287 717 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02287 Cca-Chr1 51255254 51257481 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02287 127 711 Glycoside Hydrolase AT3G49170 32.941 1.67e-105 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02287 - - ccaj:109802654 1387.47