Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02283 ATGctcttcctcttcctcttccttctaattctccccatttcctccaccatcatcctcCAAGCCAACACCACTCTGCAAAGCCCCAACAACACCTTCCAATTGGGCCTCTTCACCTTCTCCCCATCCCCATCCCCAGGCCCATCCAACTACTACCTCGCCATCCGCCACACTTCCCTCCCCACCCCAAACACAATCTGGGTCGCCAACCGCCGCACCCCCGCCCCGACCCAATCCCTCTCCTCCCTCCATCTCACCGCCACCGGCCAACTCCTCCTAACCCACAACAACACCACCCTATGGTCCACCCCCAATCACACCCCGCCTCTCACCCTCAAGCTTCTGGACTCCGGGAACCTACTCCTCCTCACCGCCGACGGCGTCGTTTCATGGCAGAGCTTCGACTCCCCCACCGATACCTGGCTCCCCGGCATCAACCTCACACGCTTCAACTCCCTCACCTCCTGGCGCACCCCAAACGACCCCTCCCCAGGCCCCTACTCCCTCCGCCTCAAACCACCCACCTACGGTCAGTTCGAGCTTCTCTTCAACGACACCGTTTCATACTGGTCCACCGGAAACTGGACCAACGGCCGGTTCCTCAACGTCCCAGAAATGAccatcccctacctctactccttccacttcgcctaccccttctccccccaagcctccttcggcttctccGAGCAGCTCTCCGACGCCGGCCTCCGCCCCCCCACCATGTTCCGCCTCGAGCCCTTCGGCCAAATCCGCCAGTACACGTGGAACGACCAGACTGGGTCCTGGAACATGTTCTGGGCCCGACCCGACCCGCTCTGCCAGGTTCGGGGGCTCTGCGGGAGGTTTGGGCTCTGCATTGGGCAACCCTCCAGGCTCTGTGACTGCCTCCCCGGGTTTCAGCCTCGGGATAACGGAAGCTGGGCTTCCGGTGATTACACGAGTGGCTGTTACCGTGCGGACGCCGAGTGTGGGAAAAAGGATGGCTTTCGAGATCTGGGTGTTGTGGGGTTTGGATATGGGAATGTGAGTTTGGTTAAGGGGAAATCTAGACGCTTTTGCGAGCGGGAGTGTTTGGGCTCTTGTGGCTGTGTTGGCTTGGCTTTTGATCGAGTGAGTGGGATTTGTAAGAATTTTTATGGGTGGCTGTCGGATTTTCAGAATTTGAGTTCTTCTTCGGGGGAGCTTTTGTACGTTAGGGTTCCTGGGTCTCGGAGGGGGTTGGATAGGAGggtgttgagtggggttgtggttgggtcggttgcggttttgggggtggtggtggtgacgttgttggtgtttgtgaagaggtgtgggaagaggggggtggaggaggaggaagaTGGGTTTGTGCCTGTGTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAGTTGGCCACTCGCGGGttctcggagaaagttgggcatggagggtttgggacggtgtttcaaggggagttgagcgactcttcggttgtggcggtgaagaggttggagaggccggggggtggggagaaggagttcagggctgagatgttggaggggttggtggaggtgagtgttcctccaccgcccaagttgcttcaagcGCTGGTTACTGGGGATTCCTTTCATGGGGTCAAGGCTGATTCTGGCAATGGGGTGTCTACTGGTGGCAGCTTATCTGATGGCAACTTGGAAGTGTCAACTGCTGATTCTGAATCATATACAGGGAATGTTTTTTCCCCCTTGGATGAGAATGTCAATAATGGATGCATAAAGTCTGGTGGCCTCTGA 1776 0.4386 MLFLFLFLLILPISSTIILQANTTLQSPNNTFQLGLFTFSPSPSPGPSNYYLAIRHTSLPTPNTIWVANRRTPAPTQSLSSLHLTATGQLLLTHNNTTLWSTPNHTPPLTLKLLDSGNLLLLTADGVVSWQSFDSPTDTWLPGINLTRFNSLTSWRTPNDPSPGPYSLRLKPPTYGQFELLFNDTVSYWSTGNWTNGRFLNVPEMTIPYLYSFHFAYPFSPQASFGFSEQLSDAGLRPPTMFRLEPFGQIRQYTWNDQTGSWNMFWARPDPLCQVRGLCGRFGLCIGQPSRLCDCLPGFQPRDNGSWASGDYTSGCYRADAECGKKDGFRDLGVVGFGYGNVSLVKGKSRRFCERECLGSCGCVGLAFDRVSGICKNFYGWLSDFQNLSSSSGELLYVRVPGSRRGLDRRVLSGVVVGSVAVLGVVVVTLLVFVKRCGKRGVEEEEDGFVPVLNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSSVVAVKRLERPGGGEKEFRAEMLEGLVEVSVPPPPKLLQALVTGDSFHGVKADSGNGVSTGGSLSDGNLEVSTADSESYTGNVFSPLDENVNNGCIKSGGL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02283 591 ProSiteProfiles PAN/Apple domain profile. 323 401 IPR003609 -
Cca01g02283 591 SMART blect_4 16 136 IPR001480 -
Cca01g02283 591 Pfam S-locus glycoprotein domain 189 302 IPR000858 GO:0048544
Cca01g02283 591 MobiDBLite consensus disorder prediction 543 562 - -
Cca01g02283 591 MobiDBLite consensus disorder prediction 546 562 - -
Cca01g02283 591 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 13 512 - -
Cca01g02283 591 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
Cca01g02283 591 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 511 572 - -
Cca01g02283 591 SUPERFAMILY alpha-D-mannose-specific plant lectins 49 194 IPR036426 -
Cca01g02283 591 ProSiteProfiles Bulb-type lectin domain profile. 10 134 IPR001480 -
Cca01g02283 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 13 512 - -
Cca01g02283 591 Gene3D Phosphorylase Kinase; domain 1 440 519 - -
Cca01g02283 591 Pfam D-mannose binding lectin 64 148 IPR001480 -
Cca01g02283 591 SUPERFAMILY Protein kinase-like (PK-like) 450 512 IPR011009 -
Cca01g02283 591 Gene3D - 12 134 IPR036426 -
Cca01g02283 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 511 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02283 Cca-Chr1 51217978 51221602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02283 442 512 Receptor kinase-like Gene Family AT1G71830 52.000 2.40e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02283 - - gmx:100778917 694.501