Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02277 ATGTCAACGCCGAAGCTCCGAAGCAAATTTCCGCCGATAACAGAATGCAACGGAACGACGTCGTCGCGCCACTCCATCGCCGCCGACCTCGACGGCACGCTCCTCATCTCCCGGAGCTCCTTCCCCTACTTCATGCTCGTCGCCGTCGAGGCCGGCAGCCTCCTCCGCGGCCTCATCCTCCTCCTCTCCGTTCCCTTCGTCATCGTCGCCTACCTCTTCGTCTCCGAAGCCCTCGGCATCCAGATCCTCATCTTCATCTCCTTCTCCGGCCTCAAGATCCGCGACATTGAGCTCGTCTCACGCGCCGTCCTCCCTAGGTTTTATGCTGCGGACGTGAGGAAGGAGAGCTTCGAGGCGTTCGACCGCTGCAAGAGGAAGGTTGTTATCACGGCGAACCCGACGCTGATGGTGGAGCCGTTCGTGAAGGACTATCTCGGCGGAGACAAGGTTCTAGGAACGGAGATCGAGGTGAATCCGAGGACGAAGAAGGCCACGGGTTTCGTGAAGAAGCCTGGCGTGCTCGTTGGAAAGTTGAAGCGTCTCGCCATTTTGAAGGAGTTCGGTGAGGAGTCGCCGGATATCGGAATCGGAGATCGTTCGTCGGATCATGATTTCATGTCCATTTGCAAGGAGGGTTACATGGTGCCACCGAGCAAAACAGCGCAACCAGTGCCACAGGAGCGTCTAAAGAGCAGACTCATCTTCCACGACGGTCGTTTCGTGCAGAAGCCAGACCCACTGAACGCCCTGATCACCTACCTATGGCTCCCCTTCGGCTTCATCCTCTCCATCATAAGGGTCTACTTCAACCTCCCCCTCCCCGAGCGCATCGTGCGCTACACCTACGAAATGCTGGGGATCAAGCTCGTCATCCGCGGCCATCGCCCTCCGCCGCCATCCCCGGGCACCCCAGGCAACCTCTACGTCTGCAACCACCGCACCGCCCTGGACCCCATCATCATCGCCATCGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGctctcccgcttcctctcccccatccccgccgtggccctcacccGCGACCGCGCCGCCGACGCCGCCCGCATCAAGGAGCTCCTCCAGCGCGGCGACCTCGTGGTGTGCCCGGAGGGCACCACGTGCCGCGAGCCCTTCCTCCTCCGCTTCAGCGCCCTCTTCGCTGAGCTCAGCGACCGGATCGTGCCCGTGGCCATGGACTGCAAGCAGAACATGTTCTACGGCACCACCGTTCGCGGGATCAAGTTCTGGGATCCTTACTACTTCTTCATGAACCCCAGGCCCGTTTACGAGGTGACCTTCCTGGACCCGTTGCCGGAGGAGATGTCGTGCAAGGCCGGGGGGAAGACGTCGATCGAGGTGGCGAATCACGTGCAGAAGGTGTTGGGGGATGTGTTGGGGTTCGAGTGTACCGGGTTGACTAGGAAGGATAAGTATATGTTGCTGGGAGGCAACGATGGGAAGGTGGAGTCTCTCTATGGTACCAAGAAGTAA 1509 0.5838 MSTPKLRSKFPPITECNGTTSSRHSIAADLDGTLLISRSSFPYFMLVAVEAGSLLRGLILLLSVPFVIVAYLFVSEALGIQILIFISFSGLKIRDIELVSRAVLPRFYAADVRKESFEAFDRCKRKVVITANPTLMVEPFVKDYLGGDKVLGTEIEVNPRTKKATGFVKKPGVLVGKLKRLAILKEFGEESPDIGIGDRSSDHDFMSICKEGYMVPPSKTAQPVPQERLKSRLIFHDGRFVQKPDPLNALITYLWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIKLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIIIAIALGRKVSCVTYSVSKLSRFLSPIPAVALTRDRAADAARIKELLQRGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAMDCKQNMFYGTTVRGIKFWDPYYFFMNPRPVYEVTFLDPLPEEMSCKAGGKTSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGTKK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02277 502 PANTHER BNAC05G00450D PROTEIN 7 500 - -
Cca01g02277 502 CDD LPLAT 282 443 - -
Cca01g02277 502 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 222 492 - -
Cca01g02277 502 Pfam haloacid dehalogenase-like hydrolase 27 206 - -
Cca01g02277 502 PANTHER ANCIENT UBIQUITOUS PROTEIN 7 500 - -
Cca01g02277 502 SUPERFAMILY HAD-like 24 220 IPR036412 -
Cca01g02277 502 Gene3D - 103 230 IPR023214 -
Cca01g02277 502 SMART plsc_2 306 407 IPR002123 GO:0016746
Cca01g02277 502 Pfam Acyltransferase 305 402 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02277 Cca-Chr1 51133152 51138284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02277 1 502 Acyl Lipid Metabolism Gene Families AT4G00400 81.076 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02277 K13508 - gmx:100794137 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02277 01 51133152 51138284 Cca01g02277 01 51133152 51138284 ECH