Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g02262 | ATGGAGCTTGTAGATGATGGAAAAGAATCATCAAATAGTGTCAATGAAATAGAAGCCACTAATTCCCCACTTATTTCTGGCCTTCCCGATGATATTTCTCTTATGTGCCTAGCAAGAGTTCCTAGAAAATACCACTCAGTCCTGAAGTGTGTCTCAAAAAGATGGAGGGACTTACTTTGCACTGAAGAGTGGCAACTTTATCGCAGAAAGCAAAAGCTTGATGAAACCTGGATTTATGCTTTGTGCAGGGACAAATTAAATGAGATTTCCTGTTATGTTTTGGATCCAAGCTCAAGAAGAGATTGGAAGCTCATTGATGGTCTTCCACCTCAAATCTCAAAAAGAAAAGGCATAGGTTTTGAAGCTTTGGGAAATAAGCTATTCCTATTAGGTGGTTGTAATGGGTTTCAAGATTCTACTAATGAGGTTTATTCATATGATGCTTCCTCAAACCGTTGGGTTGAAGCTACTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGTGAAGTATTGGATGAAAAACTATATGCTATCGGTGGAATAGTTTCAAATGCAAGTGATCTTCATTCTTGGGATACTTTTGACCCTTTGACAAATTGTTGGATATCTAATAGAGATCCTAATATTGTTTCTGATATTGAAGATTCAGTAGTTGTTGATGGGAAGATATACATCCGATGTTGCAGATATCCTGTAACTCCTCATATATATGCTGCTGTATATGAACCATCAAGCTGCAAGTGGCAGCACGCAGATACTGACATGGTTTTAGGATGGAGAGGTCCTGCAGTTGTTGTTGATGGGACGCTTTTTGTTTTGGACCAGAGTTTGGGAACTAGGTTAATGATGTGGCATAAGGAGAGACGGGAGTGGACCTCTGTGGGAAAGCTATCACCATTGCTTACAAGACCACCCTGCCGGCTTGTTGCAGTTGGCAAAAGCATTTTTATTGTTGGGAAAGGGCTTAGCACTGTGATTGTTGATGTTGGTGATTTGGGGAATGAGGATAAGGTGATATTGGGTTCTTCTATACCCAGATTATTATCTGATTTCGATGTAGTAAGTTGTAAATGCTTGTCGATATGA | 1086 | 0.3987 | MELVDDGKESSNSVNEIEATNSPLISGLPDDISLMCLARVPRKYHSVLKCVSKRWRDLLCTEEWQLYRRKQKLDETWIYALCRDKLNEISCYVLDPSSRRDWKLIDGLPPQISKRKGIGFEALGNKLFLLGGCNGFQDSTNEVYSYDASSNRWVEATSLSTARCYFACEVLDEKLYAIGGIVSNASDLHSWDTFDPLTNCWISNRDPNIVSDIEDSVVVDGKIYIRCCRYPVTPHIYAAVYEPSSCKWQHADTDMVLGWRGPAVVVDGTLFVLDQSLGTRLMMWHKERREWTSVGKLSPLLTRPPCRLVAVGKSIFIVGKGLSTVIVDVGDLGNEDKVILGSSIPRLLSDFDVVSCKCLSI | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g02262 | 361 | Gene3D | - | 68 | 334 | IPR015915 | GO:0005515 | |
| Cca01g02262 | 361 | PANTHER | F-BOX/KELCH-REPEAT PROTEIN SKIP4 | 12 | 336 | - | - | |
| Cca01g02262 | 361 | Pfam | F-box domain | 25 | 60 | IPR001810 | GO:0005515 | |
| Cca01g02262 | 361 | SMART | kelc_smart | 126 | 173 | IPR006652 | GO:0005515 | |
| Cca01g02262 | 361 | SUPERFAMILY | Kelch motif | 88 | 322 | IPR015915 | GO:0005515 | |
| Cca01g02262 | 361 | Pfam | Kelch motif | 162 | 201 | IPR006652 | GO:0005515 | |
| Cca01g02262 | 361 | Pfam | Kelch motif | 115 | 160 | IPR006652 | GO:0005515 | |
| Cca01g02262 | 361 | PANTHER | F-BOX/KELCH-REPEAT PROTEIN SKIP4 | 12 | 336 | - | - | |
| Cca01g02262 | 361 | SUPERFAMILY | F-box domain | 21 | 66 | IPR036047 | GO:0005515 | |
| Cca01g02262 | 361 | SMART | fbox_2 | 28 | 67 | IPR001810 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g02262 | Cca-Chr1 | 50863634 | 50865922 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca01g02262 | 28 | 302 | Miscellaneous Gene Families | AT4G33900 | 25.828 | 1.50e-13 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g02262 | - | - | gmx:100798211 | 602.053 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca01g02262 | 01 | 50863634 | 50865922 | Cca01g02262 | 01 | 50863634 | 50865922 | ECH |