Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02256 ATGCAAGCACTAGGTTCTTCACTCTCAGTCCCAGATTGCACTCTTCCGGTGCCCAGATTCTCAATTAATTCCACTCTTCCAAATTTTGCATCTTTTGTGTCCACCCTGAGCCCCTCCAAGGTTGGAATCAGATTGAGTTTGACTTTTGGTTGTGGGGTTAGGAGTAGTAGGTGTGATAGTTTTGGGGTCCAGTGTTTAGGGTCCAATGGAGGAGAAAATGATGATGGGTTTTACATCAGAAGATGTGTAGAGCTTGCAAGGAAGGCTCTTGGGTTTACCAGCCCCAATCCATTGGTGGGATGTGTCATTGTAAAAGATGGGAAAGTTGTTGGTGAAGGCTTCCACCCTAAAGCAGGGCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAGCGCAACGGCTTATGTGAGCTTGGAACCTTGTAACCATTTTGGTAGGACTCCACCTTGCACTGAAGCTCTAATTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCCATTGTTGCCTCCAAAGGGGTGGAAAGATTGAGAGATGCAGGAATTGAAGTAATTGCGGGTGTAGAGGAAGAACTGTGCAAGAGCCTCAACGAGGCATATATTCATCGCATGTTGACTGGAAAGCCTTTACTTACTTTGAGATATTCTCTTTCTGTCAATGGAAACTTCGTGGACTTACTTGGAAATGGAGTTACAGACTCTGGTGGATACTACTCAAGGCTATTACAAGAAAATGATGCAGTCGTAACCTCTTCTTCCTTATTCAGTGAAAATTTTTCAATTCCTACATCTCAAGAACCTGGGGCCAACCAACCAATTCGGATTATAATACATAAAGATCATAGTTCTTCGAATCAAATTCCACTTGCCATCAATGAAGTTGCTGGCAAAGTGATAATCTTTACGGACAATAAAACAGAAATAGCTCTAGAAGTGGCTCAACAAGGAATTGAAATTGTAGCTCTGGATCAAATAAATTTGGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTGTTAGATATTAGAGGGAGTTTCAGTGAGTTTGAAGAGCTTGTTAAGGAGGGTATCAAGAAGAATTATATTAATAAATTTGTCACAGAAATTTTGCCATTTTGGAACGGATGTGCTGAGCCAGATCCTCTACAGACAATGAAGAGCTTAGAGCTAGGAGTAAAAGTGGTAAATTTGAAGTCCAGGGCCTCTGATCAGAGTGTTGTAATTGAGGGGTGTTTTAAATTTGAGTAA 1290 0.4163 MQALGSSLSVPDCTLPVPRFSINSTLPNFASFVSTLSPSKVGIRLSLTFGCGVRSSRCDSFGVQCLGSNGGENDDGFYIRRCVELARKALGFTSPNPLVGCVIVKDGKVVGEGFHPKAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPIVASKGVERLRDAGIEVIAGVEEELCKSLNEAYIHRMLTGKPLLTLRYSLSVNGNFVDLLGNGVTDSGGYYSRLLQENDAVVTSSSLFSENFSIPTSQEPGANQPIRIIIHKDHSSSNQIPLAINEVAGKVIIFTDNKTEIALEVAQQGIEIVALDQINLDVILDYCNRQGLCSVLLDIRGSFSEFEELVKEGIKKNYINKFVTEILPFWNGCAEPDPLQTMKSLELGVKVVNLKSRASDQSVVIEGCFKFE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02256 429 Gene3D Cytidine Deaminase, domain 2 68 212 - -
Cca01g02256 429 SUPERFAMILY Cytidine deaminase-like 75 214 IPR016193 GO:0003824
Cca01g02256 429 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 122 160 IPR016192 GO:0008270|GO:0016787
Cca01g02256 429 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 80 360 IPR004794 GO:0008835|GO:0009231
Cca01g02256 429 CDD Riboflavin_deaminase-reductase 79 191 - -
Cca01g02256 429 Gene3D Dihydrofolate Reductase, subunit A 213 425 IPR024072 -
Cca01g02256 429 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 23 265 - -
Cca01g02256 429 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 77 172 IPR002125 -
Cca01g02256 429 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 73 195 IPR002125 -
Cca01g02256 429 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 23 265 - -
Cca01g02256 429 SUPERFAMILY Dihydrofolate reductase-like 221 422 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02256 Cca-Chr1 50803205 50805812 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02256 K11752 - gmx:100786393 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02256 01 50803205 50805812 Cca01g02256 01 50803205 50805812 ECH