Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02250 ATGAAGGTTTCTACTTCAATAGCATCCCTTGTTCTGGTGCTGATTTTGCTTTCAACAAATTGTTTGTGTTCTGAAGCACAACAGTGTCGTCCAAGTGGCAGAATCATAGGAAAGAAGCCTCCTCCAGGAGAATGCAACCAAGAGAATGATTCAGATTGTTGTGTACAAGGCAAGATGTACACAACATACAAATGTTCTCCAGCAGTGTCAAGCCACACCAAGGCTCAACTCACACTCAATAGTTTTGAAAAGGGTGGAGATGGAGGTGGCCCTTCAGCATGTGACAACCAGTACCATTCTGATGACACACCAGTAGTTGCACTCTCCACTGGATGGTTCAACAACATGAGTAGGTGTCTCCACAACATCACCATCACTGCAAATGGGAAGAGTGTGCTGGCCATGGTGGTGGATGAGTGTGACTCCACCATGGGATGTGATCAAGACCATGATTATCAACCTCCTTGTTCCAACAACATCGTTGATGCCTCCAAAGCTGTCTGGAAAGCCTTAGGTGTGCCTCAAAGTCAATGGGGTGGATTACAAATTACTTGGTCTGATGCTTAA 567 0.4533 MKVSTSIASLVLVLILLSTNCLCSEAQQCRPSGRIIGKKPPPGECNQENDSDCCVQGKMYTTYKCSPAVSSHTKAQLTLNSFEKGGDGGGPSACDNQYHSDDTPVVALSTGWFNNMSRCLHNITITANGKSVLAMVVDECDSTMGCDQDHDYQPPCSNNIVDASKAVWKALGVPQSQWGGLQITWSDA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02250 188 SUPERFAMILY Barwin-like endoglucanases 64 186 IPR036908 -
Cca01g02250 188 PANTHER LIPID TRANSFER PROTEIN 6 188 - -
Cca01g02250 188 Gene3D - 71 187 IPR036908 -
Cca01g02250 188 PANTHER RIPENING-RELATED PROTEIN 2-RELATED 6 188 IPR039271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02250 Cca-Chr1 50730543 50731142 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02250 - - gmx:100787554 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02250 01 50730543 50731142 Cca01g02250 01 50730543 50731142 ECH