Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02239 ATGACGAGATGGGTTTTCTTCTCCACCATCATCTTGCTTGTGTTTGTTGCATGCACTTTCTTCCTGGAAATTGATCTCTCTAGAATAGCAAGCACCACTTTTCTCAAGACAATTGTATTCAACGAGCAAAAACCTCAATTCTTACTTAACTGCACTGATGGGAACTCAGCAGCAACATGTTCATCATACTACCCCACAACATTTGATCTTGACAATGATTCATCATCAACCGCATCATGTCCAGAGTACTTCAGATGGATCCATGAAGATCTCAAGCCATGGCGGAGCACAGGCATCACAAGGGACATGGTGGAAAGGGGCAAAGACACTTCACATTTCAGGCTTGTAATTGTGAATGGAAAGGCTTACATAGAAAAGTATGCTAAGTCATATCAGACAAGGGATGTGTTCACAATATGGGGCATTTTGCAACTTCTAAGGTTGTACCCTGGGAAGATACCGGATTTGGAGCTGTTGTTTCAGTGTGGTGACAGAACTGTTGTGTTCAAGAAAGACTTCCAAGGGCCACAAGCCATGTCACCTCCCCCTGTGTTCCATTACTGTGGAGAGGAGAATTCATATGACATTGTCTTCCCTGATTGGACCTTCTGGGGTTGGGCTGAGCTCAACATAAGACCATGGGAAACAACATTAAATAATATAAAAGGAGGCAACAAGATAGTGCAATGGAAAGATAGGGTACCCTATGCTTTTTGGAAGGGCAACCCTGCAGTGTCTAATATTAGGAAGCAACTCGGCAAGTGCAACGTCACAGAAGAACATGATTGGAATGCAAGAATATATGACATTCAATGGCAGAAGGAGAAACAAAGCAATTTCGAGAACTCAAAACTTGAAAATCAATGCAACTTTAGATATAAGATCTATGCAGAAGGGGCCACGTGGTCTGTGAGTGAAAAGTACATAATAGCATGTGACTCAATGACCATGTTCATAGAGCCAAAGTATTATGACTTCTTTACAAGAAACATGTTACCTTTGAAACACTATTGGCCTATCAGCACCAAAAACATGTGCGAAGACATTAAGTATGCAGTGGATTGGGGAAATACTCACCTTGACAATGCACAAGCAATTGGAGATGGAGGAACTAACTACATCTTGGAGAATTTAAAGATGAAGTTTGTGTATGATTACATGTTTCATCTCTTAAATAGTTATGCAAAACTATTGAAATTCAAACCAACCATACCCCCAGGAGCTGTTGAGTTTTGTCCTGAAAGCATGGCATGTTCCCTCCGTGGTCTAAGGAAACGATTTTTGGTCGAGTCAATGGTGACATCACCAAGTGATACACCTCCATGCACAATGCCTCCTCCTTATACACCCCAAACTCTCGAACAGTTTCTGCAGGAAAAGGAAAATCTGATGGAACAAGTGAAGACTAGGAAGATCAATACAACGCAATAG 1431 0.4151 MTRWVFFSTIILLVFVACTFFLEIDLSRIASTTFLKTIVFNEQKPQFLLNCTDGNSAATCSSYYPTTFDLDNDSSSTASCPEYFRWIHEDLKPWRSTGITRDMVERGKDTSHFRLVIVNGKAYIEKYAKSYQTRDVFTIWGILQLLRLYPGKIPDLELLFQCGDRTVVFKKDFQGPQAMSPPPVFHYCGEENSYDIVFPDWTFWGWAELNIRPWETTLNNIKGGNKIVQWKDRVPYAFWKGNPAVSNIRKQLGKCNVTEEHDWNARIYDIQWQKEKQSNFENSKLENQCNFRYKIYAEGATWSVSEKYIIACDSMTMFIEPKYYDFFTRNMLPLKHYWPISTKNMCEDIKYAVDWGNTHLDNAQAIGDGGTNYILENLKMKFVYDYMFHLLNSYAKLLKFKPTIPPGAVEFCPESMACSLRGLRKRFLVESMVTSPSDTPPCTMPPPYTPQTLEQFLQEKENLMEQVKTRKINTTQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02239 476 Coils Coil 453 476 - -
Cca01g02239 476 PANTHER GLYCOSYLTRANSFERASE FAMILY 90 PROTEIN 2 475 - -
Cca01g02239 476 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cca01g02239 476 Pfam Glycosyl transferase family 90 76 469 IPR006598 -
Cca01g02239 476 SMART cap10 152 401 IPR006598 -
Cca01g02239 476 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 2 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02239 Cca-Chr1 50601442 50607031 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02239 - - gmx:100813234 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02239 01 50601442 50607031 Cca01g02239 01 50601442 50607031 ECH