Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02224 ATGGCAGAAGCAACAACAGGGTACGCTGTTGTGACTGGAGCAAATAAAGGGATTGGATTTGCAATATGCAAGCAATTGGCTTCAAATGGCATCACTGTGGTGCTGACAGCCAGAGATGAGACGAGGGGTCTTGAAGCTGTTGAGAAACTCAAAGAACTTGGTCTCAATGGCCATGTGCTTTTTCATCAACTTGATGTTGCAGATCCTGCAAGTATAGGATCACTTGCAGATTTCATCAGGAACCAATTTGGAAAGCTAGATATTTTGGTAAACAATGCTGGAATTCCTGGAGCACATGTGAACGGTGAGGCTTTGGTTGCTGCTGATATAGTGAAACATGCTGGCCGTGTTGATTGGAGTAAAATAGTAACTAATAGCTACGAATTAACAGAAGCAGCTCTTAAAACAAACTACTATGGAGCCAAGGAACTGACCACAACACTTATTCCCCTTCTCCAGCTCTCAAGCTCCCCAAAAATTGTCAATGTTTCATCATCCATGGGAAGACTAGAGAATATACCAAATGGTTGGCCTAAAGAAGCACTGAGTGATGTTGAAAACCTTACAGAAGAAAAGATTGATGAGATTTTGAATGAATTTCTAAAGGACTTTAAAGAGGGTTCACTAGAAACCAAAGGTTGGCCCCTTGCTATGCCTGCATATAGTGTCTCAAAAGCTGCTCTGAATGCCTACACAAGGGTTCTGGCCAAGAAGCACCCCTCATTCTGCATCAATGCTCTTTGTCCTGGCTATGTGAAAACAGACATAAACTACAACGCTGGTATTCTAACACCTGATGAAGGTGCTGAAGCTGCTGTGAGATTGGCACTGCTACCTCATGGTGCTCCTTCTGGCCTCTTCTTCTTTCGAACCGAAGAAAAACCATTCTGA 891 0.431 MAEATTGYAVVTGANKGIGFAICKQLASNGITVVLTARDETRGLEAVEKLKELGLNGHVLFHQLDVADPASIGSLADFIRNQFGKLDILVNNAGIPGAHVNGEALVAADIVKHAGRVDWSKIVTNSYELTEAALKTNYYGAKELTTTLIPLLQLSSSPKIVNVSSSMGRLENIPNGWPKEALSDVENLTEEKIDEILNEFLKDFKEGSLETKGWPLAMPAYSVSKAALNAYTRVLAKKHPSFCINALCPGYVKTDINYNAGILTPDEGAEAAVRLALLPHGAPSGLFFFRTEEKPF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02224 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cca01g02224 296 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Cca01g02224 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Cca01g02224 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Cca01g02224 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Cca01g02224 296 Gene3D - 2 296 - -
Cca01g02224 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 281 IPR036291 -
Cca01g02224 296 Pfam short chain dehydrogenase 217 258 IPR002347 -
Cca01g02224 296 Pfam short chain dehydrogenase 9 170 IPR002347 -
Cca01g02224 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 1 296 - -
Cca01g02224 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca01g02224 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Cca01g02224 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Cca01g02224 296 CDD carb_red_PTCR-like_SDR_c 8 296 IPR045313 GO:0016616
Cca01g02224 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 296 - -
Cca01g02224 296 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 208 236 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02224 Cca-Chr1 50420840 50423261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02224 9 168 Miscellaneous Gene Families AT2G29150 32.716 3.05e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02224 K15095 - gmx:100803877 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02224 01 50420840 50423261 Cca01g02224 01 50420840 50423261 ECH